@article{brooks86,
	Author = {R.A. Brooks},
	Date-Added = {2008-06-05 15:16:00 -0700},
	Date-Modified = {2008-06-05 15:17:26 -0700},
	Journal = {IEEE Journal of Robotics and Automation},
	Pages = {14--23},
	Title = {A Robust Layered Control System for a Mobile Robot},
	Volume = {RA-2},
	Year = {1986}}

@inproceedings{Brooks91intelligencewithoutrea,
    author = {Rodney A. Brooks},
    title = {Intelligence without reason},
    booktitle = {Computers and Thought, IJCAI},
    year = {1991},
    pages = {569--595},
    publisher = {Morgan Kaufmann}
}
                  
@article{Brooks91intelligencewithoutrep,
    author = {Rodney Brooks},
    title = {Intelligence Without Representation},
    journal = {Artificial Intelligence},
    year = {1991},
    volume = {47},
    pages = {139--159}
}                  
                  
@inproceedings{zheng92,
author={Zheng, X.}, 
booktitle={Autonomous Underwater Vehicle Technology, 1992. AUV '92., Proceedings of the 1992 Symposium on}, 
title={Layered control of a practical AUV}, 
year={1992}, 
month={jun}, 
pages={142-147}, 
doi={10.1109/AUV.1992.225181}}


@article{allen84,
author = {J. Allen},
title = {{Towards a General Theory of Action and Time}},
journal = {{Artificial Intelligence}},
volume = {23(2)},
pages = {123154},
year = 1984
}
                  
@inproceedings{loch89,
author={J. Loch and E. Wallar and J.G. Bellingham and R. Beaton and
                  M. Triantafyllou}, 
booktitle={Unmanned Untethered Submersible Technology, 1989. Proceedings of the 6th International Symposium on}, 
title={Software Development for the Autonomous Submersible Program at MIT Sea Grant and Draper Laboratory}, 
year={1989}, 
month={jun}, 
pages={25-32}, 
doi={10.1109/UUST.1989.754700}}                  
                  
@inproceedings{bellingham90,
author={J.G. Bellingham and T.R. Consi and R.M. Beaton and W. Hall}, 
booktitle={Autonomous Underwater Vehicle Technology, 1990. AUV '90., Proceedings of the (1990) Symposium on}, 
title={Keeping layered control simple}, 
year={1990}, 
month={jun}, 
pages={3-8}, 
doi={10.1109/AUV.1990.110431}}
                  
@inproceedings{bellingham94,
	Author = {J.G. Bellingham and J.J. Leonard},
	Booktitle = {IARP 2nd Workshop on Mobile Robots for Subsea Environments},
	Date-Added = {2008-06-05 15:12:22 -0700},
	Date-Modified = {2008-06-05 15:14:28 -0700},
	Month = {May},
	Title = {{Task Configuration with Layered Control}},
	Year = {1994}}

@inproceedings{bellingham96,
	Author = {J.G. Belingham and T.R. Consi},
	Booktitle = {IARP Workshop on Mobile Robots for Subsea Environments},
	Month = {October},
	Title = {{State Configured Layered Control}},
	Year = {1996}}
                  
@techreport{moos,
author = {P. M. Newman},
title = {MOOS - A Mission Oriented Operating Suite},
year = 2003,
institution = "MIT Dept. of Ocean Engineering",
number = "OE2003-07"}


@misc{moos-auton,
howpublished ={[Online] Available:
                  http://18.38.2.158/moos-dawg11/pmwiki/pmwiki.php},
title = {MOOS Development and Applications Working Group},
address = {Cambridge MA},
month = July,
year = 2011}
                  
@techreport{rudnick03,
	Address = {http://www.geo-prose.com/ALPS},
	Author = {D.L. Rudnick and M.J. Perry},
	Pages = {64 pp},
	Title = {{ALPS: Autonomous and Lagrangian Platforms and Sensors, Workshop Report}},
	Year = {2003}}

@article{ryan05,
	Author = {J. P. Ryan and F. P. Chavez and J. G. Bellingham},
	Date-Added = {2008-06-05 10:15:26 -0700},
	Date-Modified = {2008-06-05 10:18:56 -0700},
	Journal = {Marine Ecology Progress Series},
	Pages = {23-32},
	Title = {Physical-biological coupling in Monterey Bay, California: Topographic influences on phytoplankton ecology},
	Volume = {287},
	Year = {2005}}
                  
@article{ryan08a,
	Author = {J. P. Ryan and J.F.R. Gower and S.A. King and W.P. Bissett and A.M. Fischer and
                  R.M. Kudela and Z. Kolber and F. Mazzillo and
                  E.V. Rienecker and F.P. Chavez},
	Journal = {Geophysical Research Letters},
	Title = {A coastal ocean extreme bloom incubator},
	Volume = {35},
	Year = {2008}}
                  
@article{ryan08b,
	Author = {J. P. Ryan and A.M. Fischer and R.M. Kudela and
                  J.F.R. Gower and S.A. King and R. Marin III and F.P. Chavez},
	Journal = {Continental Shelf Research},
	Title = {Influences of upwelling and downwelling winds on red tide bloom dynamics in Monterey Bay, California},
        Volume = {In Review},
	Year = {2008}}
                  

@article{shulman03,
	Author = {I. Shulman and S.H.D. Haddock and D.J. McGillicuddy
                  and J.D. Paduan and P.W. Bissett},
	Journal = {J. Atmospheric and Oceanic Technology},
	Title = {Numerical modeling of
                  bioluminescence distributions in the coastal
                  ocean},
        Volume = {20},
        Pages = {1060-1068},
	Year = {2003}}
                  

@article{johnson08,
	Author = {K.S. Johnson and J.A. Needoba},
	Journal = {Limnology and Oceanography},
	Title = {Mapping the spatial
                  variability of plankton metabolism using nitrate and
                  oxygen sensors on an autonomous underwater vehicle},
        Volume = {In Press},
	Year = {2008}}

@article{kudela07,
	Author = {R.M. Kudela and J. P. Ryan and M.D. Blakely and J.Q. Lanel and T.D. Peterson},
	Journal = {Harmful Algae},
	Title = {Linking the physiology and ecology of Cochlodinium
                  to better understand harmful algal bloom events: A
                  comparative approach}, 
	Year = {2007}}


@article{yuh,
	Author = {J. Yuh},
	Date-Added = {2008-06-05 10:07:01 -0700},
	Date-Modified = {2008-06-05 10:08:34 -0700},
	Journal = {Autonomous Robots},
	Pages = {7-24},
	Title = {{Design and Control of Autonomous Underwater Robots: A Survey}},
	Volume = {8},
	Year = {2000}}

@article{fox06,
author = {M. Fox and M. Ghallab and G. Infantes and D. Long},
title = {Robot introspection through learned hidden markov model},
journal = {Aritificial Intelligence Journal},
year = {2006},                  
pages = {59–113},                  
volume = {170(2)}}

@inproceedings{mcgann08a,
	Address = {Pasadena},
	Author = {C. McGann and F. Py and K. Rajan and H. Thomas and
                  R. Henthorn and R. McEwen},
	Booktitle = {Intnl. Conf. on Robotics and Automation (ICRA)},
	Month = {May},
	Title = {{A Deliberative Architecture for AUV Control}},
	Year = {2008}}
                  
@article{rabiner86,
author = {L. R. Rabiner},
title = {An Introduction to Hidden Markov Models},
journal = {IEEE ASSP Magazine},
pages = {4-16},
year = {1986}}

@INPROCEEDINGS{Rabiner89atutorial,
    author = {Lawrence R. Rabiner},
    title = {A tutorial on hidden markov models and selected applications in speech recognition},
    booktitle = {Proceedings of the IEEE},
    year = {1989},
    pages = {257--286}
}

@techreport{zhu05,
author = "Xiaojin Zhu", 
title = "Semi-Supervised Learning Literature Survey", 
institution = "Computer Sciences, University of Wisconsin-Madison", 
number = "1530", 
year = 2005 
} 


@inproceedings{fox2007,
	Author = {M. Fox and D. Long and F. Py and K. Rajan and J. P. Ryan},
	Booktitle = {Proc. of IEEE/OES OCEANS Conference},
	Publisher = {IEEE},
	Title = {{In Situ Analysis for Intelligent Control}},
	Year = {2007}}


@inproceedings{mcgann08b,
	Address = {Chicago, IL},
	Author = {C. McGann and F. Py and K. Rajan and J. P. Ryan and R. Henthorn},
	Booktitle = {AAAI},
	Title = {{Adaptive Control for Autonomous Underwater Vehicles}},
	Year = 2008}

@inproceedings{mcgann08c,
	Address = {Sydney, Australia},
	Author = {C. McGann and F. Py and K. Rajan},
	Booktitle = {{Submitted to ICAPS, Intnl. Conf. on Automated
                  Planning and Scheduling}},
	Title = {{On Efficient Deliberation and Execution}},
	Year = 2008}

@inproceedings{mcgann08d,
	Address = {Athens},
	Author = {C. McGann and F. Py and K. Rajan and J. P. Ryan and
                  H. Thomas and R. Henthorn and R. McEwen} ,
	Booktitle = {{Intnl. Symp. on Experimental Robotics (ISER)}},
	Title = {{Preliminary Results for Model-Based Adaptive Control of an Autonomous Underwater Vehicle}},
	Year = 2008}
                  
@article{Gertler,
	Author = {M. Gertler and G.R. Hagen},
	Journal = {Naval Ship Research and Development Center Report 2510},
	Month = {June},
	Title = {{Standard Equations of Motion for Submarine Simulation}},
	Year = {1967}}

@article{frank2003,
	Author = {J. Frank and A.K. J\'onsson},
	Journal = {Constraints},
	Month = {oct},
	Number = {4},
	Pages = {339--364},
	Title = {{Constraint-based Attribute and Interval Planning}},
	Volume = {8},
	Year = {2003}}

@incollection{rajan12,
author = {K. Rajan and F. Py},
title = {{T-REX: Partitioned Inference for AUV Mission Control}},
year = 2012,
booktitle = {Further Advances in Unmanned Marine Vehicles},
editor = {G. N. Roberts and R. Sutton},
isbn = {978-1849194792},                  
publisher = {IEE},
note = {To be Published}}
                  

@incollection{mus94,
author = {N. Muscettola}, 
title = {{HSTS: Integrating Planning and Scheduling}},
editor = {M. Fox and M. Zweben},
booktitle = {Intelligent Scheduling},
publisher = {Morgan Kaufmann},
year = {1994}}

@inproceedings{jonsson00,
author = {A.K. J\'onsson and P. Morris and N. Muscettola and K. Rajan and B. Smith},
booktitle = {Artificial Intelligence Planning and Scheduling (AIPS)},
title = {{Planning in Interplanetary Space: Theory and Practice}},
year = {2000}}

@inproceedings{bedrax03,
	Author = {T. Bedrax-Weiss and J. Frank and A.K. Jonsson and C. McGann},
	Booktitle = {Proc.  ICAPS-03 Workshop on Plan Execution},
	Title = {{Identifying Executable Plans}},
	Year = {2003}}

@inproceedings{bernadini07,
	Author = {S. Bernadini and D.E. Smith},
	Booktitle = {Proc. ICAPS-07 Workshop on Heuristics for Domain-independent Planning: Progress, Ideas, Limitations, Challenges},
	Title = {{Developing Domain-Independent Search Control for Europa2}},
	Year = {2007}}

@inproceedings{lemai04,
author = {S. Lemai-Chenevier and F. Ingrand},
	Booktitle = {{Assoc. for the Advancement of Artificial
                  Intelligence, National Conference (AAAI)}},
	Title = {{Interleaving Temporal Planning and Execution in Robotics Domains}},
	Year = {2004}}

@phdthesis{lemai-chenevier2004,
	Address = {Toulouse, France},
	Author = {Lemai-Chenevier, S.},
	Month = {June},
	School = {Institut National Polytechnique de Toulouse},
	Title = {{IxTeT-EXEC}: Planning, Plan Repair  and Execution Control with Time and Resource Management},
	Year = {2004}}
                  
@inproceedings{rajan00,
	Author = {K. Rajan and D. Bernard and G. Dorais and E. Gamble
                  and B. Kanefsky and J. Kurien and W. Millar and
                  N. Muscettola and P.P. Nayak and N. Rouquette and
                  B. Smith and W. Taylor and Y. Tung},
	Booktitle = {Proc. Prestigious Applications of Intelligent Systems, ECAI},
	Title = {{Remote Agent: An Autonomous Control System for the New Millennium}},
	Year = {2000}}

@article{boehm86,
 author = {Boehm, B},
 title = {A spiral model of software development and enhancement},
 journal = {SIGSOFT Softw. Eng. Notes},
 volume = {11},
 issue = {4},
 month = {August},
 year = {1986},
 issn = {0163-5948},
 pages = {14--24},
 numpages = {11},
 publisher = {ACM}
 }

@inproceedings{mus98,
	Author = {N. Muscettola and P.P. Nayak and B. Pell and B.C. Williams},
	Booktitle = {AI Journal},
	Pages = {5--48},
	Title = {{Remote Agent: To Boldly Go Where No AI System Has Gone Before}},
	Volume = {103},
	Year = {1998}}

@article{chien99,
title={{Integrated Planning and Execution for Autonomous Spacecraft}},
author={S. Chien and R. Knight and A. Stechert and R. Sherwood and G. Rabideau},
journal={IEEE Aerospace},
year={1999},
volume={1},
pages={263-271}}

@inproceedings{chien05,
	Author = {S. Chien and R. Sherwood and D. Tran and B. Cichy
                  and G. Rabideau and R. Castano and A. Davies and
                  D. Mandl and S. Frye and B. Trout and S. Shulman and D. Boyer},
	Booktitle = {Journal of Aerospace Computing, Information, and Communication},
	Month = {April},
	Title = {{Using Autonomy Flight Software to Improve Science Return on Earth Observing One}},
	Volume = {2},
	Year = {2005}}

@inproceedings{chien00,                  
author = {S. Chien and R. Knight and A. Stechert and R. Sherwood and G. Rabideau}, 
title = {"Using Iterative Repair to Improve the Responsiveness of Planning and Scheduling"},
booktitle = {Proceedings of the 5th International Conference on Artificial Intelligence Planning and Scheduling (AIPS)}, 
address = {Breckenridge, CO},
year = 2000}
                  
@inproceedings{chien03,
author = {S. Chien and R. Sherwood and D. Tran and R. Castano and
                  B. Cichy and A. Davies and G. Rabideau and N. Tang
                  and M. Burl and D. Mandl and S. Frye and
                  J. Hengemihle and J. Agostino and R. Bote and
                  B. Trout and S. Shulman and S. Ungar and J. Van
                  Gaasbeck and D. Boyer and M. Griffin and H. Burke
                  and R. Greeley  and T. Doggett and K. Williams and
                  V. Baker and J. Dohm}, 
title = {“Autonomous Science on the EO-1 Mission”}, 
booktitle = {Proceedings of the International Symposium on Artificial Intelligence, Robotics, and Automation in Space (i-SAIRAS)}, 
month = May, 
year = 2003}
                  
@misc{icl,
title = {Interface and Control Systems}, 
howpublished = {[Online] Available: http://www.interfacecontrol.com}}

@techreport{DS1report,
author = {D. Bernard and G. Dorais and E. Gamble and
                  B. Kanefsky and J. Kurien and W. Millar and
                  N. Muscettola and P.P. Nayak and K. Rajan and
                  N. Rouquette and B. Smith and W. Taylor and Y. Tung},
institution = {NASA Technical Report},
title = {{Remote Agent Experiment: Final Report}},
Year = {2000}}


@inproceedings{mus02,
	Author = {N. Muscettola and G. Dorais and C. Fry and R. Levinson and C. Plaunt},
	Booktitle = {Proc.  3rd Intnl. NASA Workshop on Planning and Scheduling for Space},
	Month = {October},
	Title = {{IDEA: Planning at the Core of Autonomous Reactive Agents}},
	Year = {2002}}

@inproceedings{mus06,
author = {Aschwanden, Pascal and Baskaran, Vijay and Bernardini, Sara
                  and Fry, Chuck and Moreno, Maria and Muscettola,
                  Nicola and Plaunt, Chris and Rijsman, David and
                  Tompkins, Paul},
title = {{Model-unified planning and execution for distributed autonomous system control}},
booktitle = {AAAI Fall Symposium on Spacecraft Autonomy},
year = {2006},
address = {Washington, DC}
}



@article{Ingrand07,
	Author = {F. F. Ingrand and S. Lacroix and S. Lemai-Chenevier and F. Py},
	Journal = {Journal of Field Robotics},
	Month = {July},
	Number = {7},
	Pages = {559 - 580},
	Title = {{Decisional Autonomy of Planetary Rovers}},
	Volume = {24},
	Year = {2007}}

@inproceedings{mus04,
	Author = {A. Finzi and F. F. Ingrand and N. Muscettola},
	Booktitle = {Proceedings of IROS},
	Title = {{Model-based Executive Control through Reactive Planning for Autonomous Rovers}},
	Year = {2004}}

@inproceedings{Dias:2003ua,
author = {Dias, M. Bernardine and Lemai, Solange and Muscettola, Nicola},
title = {{A real-time rover executive based on model-based reactive planning}},
booktitle = {International symposium on Artificial Intelligence,
                  Robotics and Automation in Space (iSAIRAS)},
year = {2003}
}
                  
@article{mcphee-shaw2006,
	Author = {E. McPhee-Shaw},
	Journal = {Deep-Sea Research II},
	Month = {Jan},
	Pages = {45-49},
	Title = {Boundary-interior exchange. Reviewing the idea that
                  internal-wave mixing enhances lateral dispersal near
                  continental margins},
	Volume = {53},
	Year = {2006}}
                  
@inproceedings{SJohnson08,
	Author = {S. B. Johnson and A. Sherman and R. Marin and J. Ryan and R. C. Vrijenhoek},
        Address = {Lisbon, Portugal},
	Booktitle = {{8th Larval Biology Symposium}},
	Month = {July},
	Title = {{Detection of Marine Larvae using the AUV Gulper and Bench-top SHA}},
	Year = {2008}}

@article{ryan10,
Author = {J. P. Ryan and S. Johnson and A. Sherman and K. Rajan and
                  F. Py and H. Thomas and J.B.J. Harvey and L. Bird
                  and J. Paduan and R. Vrijenhoek},
Title = {{Mobile autonomous process sampling within coastal ocean observing systems}},
Journal = {Limnology \& Oceanograhy: Methods},
volume = {8}, 
pages = {394-402},
year = 2010}

@article{williams03,
author = {Williams, B.C. and Ingham, M. D. and Chung, S.H. and Elliott, P.H.},
title = {{Model-based Programming of Intelligent Embedded Systems and Robotic Space Explorers}},
journal = {Proceedings of the IEEE},
year = {2003},
volume = {91},
number = {1},
pages = {212--237}
}


@article{salido06,
	Author = {M. A. Salido and F. Barber},
	Journal = {Applied Mathematics and Computation},
	Pages = {212-237},
	Title = {{Distributed CSPs by Graph Partitioning}},
	Volume = {183},
	Year = {2006}}

@article{vidal99,
	Author = {T. Vidal and H. Fargier},
	Journal = {JETAI},
	Number = 1,
	Pages = {23-45},
	Title = {Handling contingency in temporal constraint networks: from consistency to controllabilities},
	Volume = 11,
	Year = {1999}}

@article{Stentz04,
    author = {Stentz, A. and Dias, M. and Zlot, R. and Kalra, N.},
    journal = {10th Intnl. Conf. on Robotics and Remote Systems for
                  Hazardous Environments.},
    title = {{Market-Based Approaches for Coordination of Multi-Robot 
	Teams at Different Granularities of Interaction}},
    year = {2004},
}

@inproceedings{morris01,
	Author = {P. Morris and N. Muscettola and T. Vidal},
	Booktitle = {Intnl. Joint Conference on Artificial
                  Intelligence (IJCAI)},
	Pages = {494-502},
	Title = {{Dynamic Control Of Plans With Temporal Uncertainty}},
	Year = {2001}}

@inproceedings{Bird07,
	Address = {Vancouver, Canada},
	Author = {L. Bird  and A. Sherman and J. P. Ryan},
	Booktitle = {Proc Oceans MTS/IEEE Conference},
	Title = {{Development of an Active, Large Volume, Discrete
                  Seawater Sampler for Autonomous Underwater Vehicles}},
	Year = {2007}}

@inproceedings{Smith04,
	Address = {Whistler, Canada},
	Author = {D.E Smith},
	Booktitle = {{Proc. Intnl. Conf. on Automated Planning and
                  Scheduling (ICAPS)}},
	Title = {{Choosing Objectives in Over-Subscription Planning}},
	Year = 2004}

@book{kohonen,
	Author = {T. Kohonen},
	Publisher = {Springer Series in Information Sciences},
        Volume = {30},
	Title = {Self-{O}rganisation {M}aps},
	Year = {2001}}


@inproceedings{gat98,
	Author = {E. Gat},
	Booktitle = {Artificial Intelligence and Mobile Robots},
	Editor = {D. Kortenkamp and R. Bonnasso and R. Murphy},
	Pages = {195--210},
	Publisher = {MIT Press},
	Title = {{On Three-Layer Architectures}},
	Year = 1998}

@inproceedings{ thrun99minerva,
    author = {Thrun, S., {\etal}}, 
    title = "{MINERVA}: A Tour-Guide Robot that Learns",
    booktitle = "{KI} - Kunstliche Intelligenz",
    pages = "14-26",
    year = "1999",
    url = "citeseer.ist.psu.edu/thrun99minerva.html" }

@inproceedings{Thompson_2006_5308,
   author = {D.R. Thompson and T. Smith and D. Wettergreen},
   title = "Autonomous Detection of Novel Biologic and Geologic Features in Atacama Desert Rover Imagery",
   booktitle = "Proc. of the Lunar and Planetary Science Conference",
   month = "March",
   year = "2006"
}

@article{Bellingham07,
author = {J.G. Bellingham and K. Rajan},
title = "{{Robotics in Hostile Environments}}",
journal = {Science},
Number = 5893,
Volume = 300,
Year = 2007}

@book{ghallab04,
author = {{M. Ghallab and D. Nau and P. Traverso}},
publisher = {Elsevier Science},
title = {Automated Planning Theory and Practice},
year = {2004}}


@inproceedings{montemerlo06,
author = {M. Montemerlo and S. Thrun and H. Dahlkamp and D. Stavens
                  and S. Strohband},
title = {{Winning the DARPA Grand Challenge with an AI robot}},
booktitle = {{Assoc. for the Advancement of Artificial
                  Intelligence, National Conference (AAAI)}},
year = 2006,
Address = {Boston, MA}
}

@article{squyres04,
Author = {Squyres, S., {\etal}},
title = {{The Spirit Rover's Athena Science Investigation at Gusev
                  Crater, Mars}},
journal = {Science},
Volume = 306,
pages = "1698-1703",
Year = 2004}

@ARTICLE{972072,
title={{Guest editorial - Autonomous Ocean-Sampling Networks}},
author={T.B. Curtin and J.G. Bellingham},
journal={Oceanic Engineering, IEEE Journal of},
year={2001},
month={Oct},
volume={26},
number={4},
pages={421-423},
doi={10.1109/JOE.2001.972072},
ISSN={0364-9059}, }

@ARTICLE{1250648,
title={Terrain model registration for single cycle instrument placement},
author={M. Deans and C. Kunz and R. Sargent and L. Pedersen},
journal={Proc. Intelligent Robots and Systems (IROS)},
year={2003},
month={Oct.},
volume={1},
number={},
pages={ 323-328 vol.1},
doi={10.1109/IROS.2003.1250648},
ISSN={ }, }

                  
@article{dechter91,
title = {{Temporal Constraint Networks}},
author = {R. Dechter and I. Meiri and J. Perl},
journal = {AI Journal},
volume = 49,
number = {1-3},
pages = {61-95},
year = 1991
}


@ARTICLE{1980Sci,
   author = {Spiess, F.N., {\etal}},
    title = "{East Pacific Rise: Hot Springs and Geophysical Experiments}",
  journal = {Science},
     year = 1980,
    month = mar,
   volume = 207,
    pages = {1421-1433},
  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{2002AGUFMOS12B0282B,
   author = {Bellingham, J.G., {\etal}},
    title = "{Field Results for an Arctic AUV Designed for Characterizing Circulation and Ice Thickness}",
  journal = {AGU Fall Meeting Abstracts},
 keywords = {4207 Arctic and Antarctic oceanography, 4294 Instruments and techniques, 4540 Ice mechanics and air/sea/ice exchange processes, 4594 Instruments and techniques},
     year = 2002,
    month = dec,
    pages = {B282+},
  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@inproceedings{bresina03,
author = {J. Bresina and A. Jonsson and P. Morris and K. Rajan}, 
title = {{Constraint Maintenance with Preferences and Underlying Flexible Solution}}, 
booktitle = {Proceedings of Online Constraint Solving: Handling Change and Uncertainty CP2003 workshop}, 
address = {Kinsale Co. Cork, Ireland}, 
month = {September}, 
year = 2003}

@inproceedings{bresina05,
title = {{Activity Planning for the Mars Exploration Rovers}},
author = {J. Bresina and A.K. Jonsson and P.H. Morris and K. Rajan},
booktitle = {International Conference on Automated Planning and
                  Scheduling (ICAPS)},
address = {Monterey, California},
year = 2005}
                  
@inproceedings{bresina05a,
author = {J. Bresina and A. Jonsson and P. Morris and K. Rajan}, 
title = {{Mixed-Initiative Planning in MAPGEN: Capabilities and Shortcomings}},  
booktitle = {Proceedings of the workshop on Mixed-Initiative Planning and Scheduling, ICAPS}, 
address = {Monterey, California}, 
year = 2005}
                  
@article{aichang04,
author = {M. Ai-Chang and J. Bresina and L. Charest and  A. Chase and
                  J.C. Hsu and  A. Jonsson and  B. Kanefsky and
                  P. Morris and  K. Rajan and J. Yglesias and
                  B.G. Chafin and W.C. Dias and P.F. Maldague},
title = {{MAPGEN: Mixed Initiative Planning and Scheduling for the
                  Mars'03 MER Mission}},
journal = {IEEE Intelligent Systems},
volume = 19,
number = 1,
year = 2004}
                  
@article{williams96,
author = {B.C. Williams and P.P Nayak},
title = {{Immobile Robots: AI in the New Millennium}},
journal = {{AI} Magazine},
year = {Fall 1996}
}

@article{fairfield07,
title = {{Real-Time SLAM with Octree Evidence Grids for Exploration in
                  Underwater Tunnels}},
author = {N. Fairfield and G.A. Kantor and D. Wettergreen},
journal = {Journal of Field Robotics},
year = 2007
}

@article{ribas08,
	Author = {D. Ribas and P. Ridao and J.D. Tard{\'o}s and J. Neira},
	Title = {Underwater {SLAM} in Man Made Structured Environments},
	Journal = {Journal of Field Robotics},
	Volume = {Accepted for publication},
	Year = {2008}}

@book{citeulike:560702,
	author = {S. Thrun and W. Burgard and D. Fox},
	citeulike-article-id = {560702},
	howpublished = {Hardcover},
	isbn = {0262201623},
	month = {September},
	posted-at = {2007-11-24 06:03:20},
	priority = {4},
	publisher = {{The MIT Press}},
	title = {Probabilistic Robotics (Intelligent Robotics and Autonomous Agents)},
	year = {2005}
}

@article{Yoerger01012007,
author = {D.R. Yoerger and M. Jakuba and A.M. Bradley and B. Bingham},
title = {{Techniques for Deep Sea Near Bottom Survey Using an Autonomous Underwater Vehicle}},
journal = {The International Journal of Robotics Research},
volume = {26},
number = {1},
pages = {41-54},
doi = {10.1177/0278364907073773},
year = {2007} }

@book{Kohonen84,
    address = {Berlin},
    author = {Kohonen, T.},
    keywords = {bibtex-import},
    publisher = {Springer-Verlag},
    series = {Series in Information Sciences},
    title = {Self-organisation and associative memory},
    volume = {8},
    year = {1984}
}


@book{Zhu-SSLIntroduction-09,
    author = {Zhu, Xiaojin and Goldberg, Andrew B.},
    keywords = {learning, machine, semi-supervised},
    publisher = {Morgan \& Claypool Publishers},
    title = {Introduction to Semi-Supervised Learning},
    year = {2009}
}

@article{Jain-clusteringreview-ACM99,
    author = {Jain, A. K. and Murty, M. N. and Flynn, P. J.},
    journal = {ACM Computing Surveys},
    month = {September},
    number = {3},
    pages = {264--323},
    title = {Data clustering: a review},
    volume = {31},
    year = {1999}
}

@Book{Mitchell:1997:ML,
author = "Tom M. Mitchell",
title = "Machine Learning",
publisher = "McGraw-Hill",
address = "New York",
keywords = "machine learning",
year = "1997",
}

@ARTICLE{rabiner-introHMMs-86,
title={An introduction to hidden {Markov} models},
author={L. R. Rabiner and B. H. Juang},
journal={IEEE ASSP Magazine},
year={1986},
volume={3},
number={1},
pages={4-16}
} 

@book{Wilson-gesturerecog-2002,
 author = {A.D. Wilson and A.F. Bobick},
 title = {Hidden Markov models for modeling and recognizing gesture under variation},
 book = {Hidden Markov models: applications in computer vision},
 year = {2002},
 isbn = {981-02-4564-5},
 pages = {123--160},
 publisher = {World Scientific Publishing Co., Inc.},
 address = {River Edge, NJ, USA},
 }

@INPROCEEDINGS{Bui03ageneral,
    author = {Hung Bui},
    title = {A General Model for Online Probabilistic Plan Recognition},
    booktitle = {In Proc. of the International Joint Conference on Artificial Intelligence (IJCAI},
    year = {2003},
    pages = {1309--1315}
}

@ARTICLE{Bui02policyrecognition,
    author = {Hung H. Bui and Svetha Venkatesh and Geoff West},
    title = {Policy Recognition in the Abstract Hidden Markov Model},
    journal = {Journal of Artificial Intelligence Research},
    year = {2002},
    volume = {17},
    pages = {2002}
}

@article{chavez97,
author = {F.P. Chavez and J.T. Pennington and R. Herlien and
                  H. Jannasch and G. Thurmond and G.E. Friederich},
year = {1997},
title = {{Moorings and drifters for real-time interdisciplinary
                  oceanography}},
journal = {Journal of Atmospheric and Oceanic Technology},
volume = {14}, 
pages = {1199-1211}
}

@INPROCEEDINGS{968300,
title={Observing and forecasting coastal currents: Texas Automated Buoy System (TABS)},
author={Guinasso, N.L., Jr. and Yip, J. and Reid, R.O. and Bender, L.C., III and Howard, M. and Lee, L.L., III and Walpert, J.N. and Brooks, D.A. and Hetland, R.D. and Martin, R.D.},
booktitle={OCEANS, 2001. MTS/IEEE Conference and Exhibition},
year={2001},
month={},
volume={2},
number={},
pages={1318-1322 vol.2},
doi={10.1109/OCEANS.2001.968300},
ISSN={}, }

@misc{bower,
author = {A. Bower},
title = {Irminger Rings Project: Impact of Irminger Rings on Deep
                  Convection in the Labrador Sea},
year = 2007,
url = {http://www.whoi.edu/science/PO/people/abower/IrmingerRingsmain.html}}

@article{bellingham00,
author = {J. G. Bellingham and K. Streitlien and J. Overland and
                  S. Rajan and P. Stein and J. Stannard and W. Kirkwood and D. Yoerger},
title = {An Arctic basin observational capability using AUVs},
journal = {Oceanography}, 
volume = {13}, 
issue = {2}, 
pages = {64–71}, 
year = {2000}
}


@article{Damiani:2004,
author = {S. Damiani and G. Verfaillie and M. Charmeau}, 
journal = {Proc. 4th International Workshop on Planning and Scheduling
                  for Space},
title = {{An Anytime Planning Approach for the Management of an Earth Watching Satellite}},
year = {2004},
month = {Jan},
}

@book{jain,
author = {A. K. Jain and R.C. Dubes},
year = 1988,
title = {Algorithms for Clustering Data},
Publisher = {Prentice-Hall}
}

@techreport{denuit00,
	Author = {Denuit, M. and Van Bellegem, S.},
	Institution = {Statistical Institute of the "Universit\'e Catholique De Louvain"},
	Month = {December},
	Number = {0034},
	Title = {On the Stop-loss and Total Variation Distances between Random Sums},
	Year = {2000}}


@article{kullback51,
	Author = {Kullback, S. and Leibler, R. A.},
	Journal = {Annals of Mathematical Statistics},
	Number = {1},
	Pages = {79-86},
	Title = {On Information and Sufficiency},
	Volume = {22},
	Year = {1951}}

@inproceedings{owen96,
	Author = {Owen, C. and Nehmzow, U.},
	Booktitle = {In Proc. Eurobot 96. },
	Title = {Route Learning in Mobile Robots through Self-Organisation},
	Year = {1996}}ç


@phdthesis{Linda98MITThesis,
  author =	 "R. E. Larson",
  title =	 "Acoustic Classification of Zooplankton",
  school =	 "Massachusetts Institute of Technology /Woods Hole Oceanographic Institution Joint Program",
  address =	 "Massachusetts Institute of Technology",
  year =	 1998
}

@article{Martin96,
author = {L Martin and T Stanton and P Wiebe and J. F. Lynch}, 
journal = {ICES Journal of  of Marine Science},
title = {Acoustic classification of zooplankton},
volume = {53},
pages = {217–224},
year = {1996},
month = {Jan}
}


@article{MartinTrayovski03,
author = {L Martin-Trayovski and H Sosik}, 
journal = {J. Geophys. Res},
title = {Feature-based classification of optical water types in the
                  Northwest Atlantic based on satellite ocean color data}, 
year = {2003},
volume = {108(C5)}
}

@article{Barnes07,
author = {C Barnes and H Fritz and J Yoo}, 
journal = {IEEE Transactions on Geoscience and Remote Sensing},
volume = {45},
issue = 6,
month = {June},
title = {Hurricane disaster assessments with image-driven data mining in high-resolution satellite imagery},
year = {2007}
}

@article{Brekke05,
author = {C Brekke and A Solberg}, 
journal = {Remote Sensing of Environment},
title = {Oil spill detection by satellite remote sensing},
year = {2005},
volume = 95,
pages = {1–13}
}

@article{Topouzelis07,
author = {K Topouzelis and V Karathanassi and P Pavlakis}, 
journal = {ISPRS Journal of Photogrammetry and Remote Sensing},
title = {Detection and discrimination between oil spills and look-alike phenomena through neural networks},
volume = 62,
pages = {264 – 270},
year = {2007}
}

@article{Iwamoto:2001p13216,
author = {S Iwamoto and D Checkley and M Trivedi}, 
journal = {Machine Vision and Applications},
title = {REFLICS: Real-time flow imaging and classification system},
volume = 13,
pages = {1–13},
year = {2001}
}

@inproceedings{macqueen67,
title = {Some methods for classification and analysis of multivariate observations},
author = {J. MacQueen},
booktitle = {Proc. Fifth Berkeley Symposium on Mathematical Statistics and Probability},
editors = {L. Le Cam and J. Neyman}, 
year = 1967,
volume =1, 
pages = {281–297}} 


@article{baum70,
author = {L. E. Baum and T. Petrie and G. Soules and N. Weiss}, 
title = {A maximization technique occurring in the statistical analysis of probabilistic functions of Markov chains},
journal = {Annals of Mathematical Statistics}, 
volume = {41},
number = 1,
pages = {164-171}, 
year = {1970}}


@inproceedings{py10,
author = {F. Py and K. Rajan and C. McGann},
title = {{A Systematic Agent Framework for Situated Autonomous
                  Systems}},
booktitle = {{9th International Conf. on Autonomous Agents and
                  Multiagent Systems}},
year = {2010},
month = {May},
address = {Toronto, Canada}}

@inproceedings{mcgann09,
	Address = {Pasadena, California},
	Author = {C. McGann and F. Py and K. Rajan and A. Olaya},
	Booktitle = {Intnl. Workshop on Hybrid Control of
                  Autonomous Systems, in IJCAI09},
	Title = {{Integrated Planning and Execution for Robotic Exploration}},
	Year = {2009}}


@article{Kroghf:1994,
author = {A. Krogh and M. Brown and I.S. Mian and K. Sjolander and D. Haussler}, 
journal = {J. Mol. Biology},
title = {Hidden Markov models in computational biology},
year = {1994},
volume = 235,
pages = {1501-1531}
}

@book{Quinlan93-dtrees,
  author = {J. Ross Quinlan}, 
  publisher = {Morgan Kaufmann},
  title = {C4.5: Programs for Machine Learning},
  year = 1993,
  keywords = {c4.5 classification},
  month = {January}
}
@inproceedings{si04,
author = {B. Si and K. Pawelzik and J. M. Herrmann},
title = {{Robot exploration by subjectively maximizing objective
                  information gain}},
booktitle = {Proc.IEEE International Conference on Robotics and
                  Biomimetics},
year = 2004}


@article{Burstein1994,
author = {M. Burstein and D. McDermott}, 
Editor = {B. Gorayska and J. L. Mey},                  
journal = {Cognitive Technology: In Search of a Humane Interface},
title = {{Issues in the Development of Human-Computer Mixed-Initiative Planning}},
year = {1996},
publisher = {Elsevier Science},
}

@article{Burgard05,
author = {Wolfram Burgard and Mark Moors and Cyrill Stachniss and Frank Schneider}, 
                  
journal = {IEEE Transactions on Robotics},
title = {{Coordinated multi-robot exploration}},
year = {2005},
volume = {21},
pages = {376-386},
}
o                  
@article{Meyer-06,
author = {Matthias Meyer and Jean-Pierre Hermand}, 
journal = {Acoustic Sensing Techniques for the Shallow Water Environment},
title = {{Backpropagation techniques in ocean acoustic inversion: time reversal, retrogation and adjoint model -- A review}},
year = {2006},
}

@inproceedings{Parunak-2001,
 author = {Van Dyke Parunak, H. and Brueckner, Sven},
 title = {Entropy and self-organization in multi-agent systems},
 booktitle = {AGENTS '01: Proceedings of the fifth international conference on Autonomous agents},
 year = {2001},
  pages = {124--130},
 location = {Montreal, Quebec, Canada},
 publisher = {ACM},
 address = {New York, NY, USA},
 }
                  
@book{stein02,
editor = {A. Stein and F. van der Meer and B. Gorte},
title = {Spatial Statistics for remote sensing},
year = 2002,
publisher = {Kluwer Academic}                  
}                  

@Article{Zhu04,
  author = 	 {Zhengyuan Zhu and Michael Stein},
  title = 	 {Spatial sampling design for prediction with estimated parameters},
  journal = 	 {Journal of Agricultural, Biological, and Environmental Statistics},
  year = 	 {2006},
  volume = 	 {11},
  number = 	 {1},
  pages = 	 {24-44},
  month = 	 {March}
}
                  
@article{ANNsurvey-2000,
    author = {G. P. Zhang},
    journal = {Systems, Man, and Cybernetics, Part C: Applications and Reviews, IEEE Transactions on},
    number = {4},
    pages = {451--462},
    title = {Neural networks for classification: a survey},
    volume = {30},
    year = {2000}
}

@article{Aha-ibl-ml91,
    author = {David W. Aha and Dennis Kibler},
    title = {{Instance-based Learning Algorithms}},
    journal = {Machine Learning},
    volume = {6},
    year = {1991},
    pages = {37--66}
}

@book{Jensen2001-BNetworks,
    author = {Jensen, Finn V.},    
    isbn = {0387952594},
    month = {July},
    publisher = {Springer},
    series = {Information Science and Statistics},
    title = {Bayesian Networks and Decision Graphs},   
    year = {2002}
}


@article {Mantaras-IBL98,
	title = {Machine Learning from Examples: Inductive and Lazy Methods},
	journal = {Data and Knowledge Engineering Journal},
	volume = {25},
	year = {1998},
	pages = {99-123},	
	author = {Ramon L\'opez de M\'antaras and Eva Armengol}
}

@inproceedings{BresinaDMRSW02,
  author    = {John L. Bresina and
               Richard Dearden and
               Nicolas Meuleau and
               Sailesh Ramkrishnan and
               David E. Smith and
               Richard Washington},
  title     = {{Planning under Continuous Time and Resource Uncertainty:
               A Challenge for AI}},
  booktitle = {UAI},
  year      = {2002},
  pages     = {77-84}
}

@proceedings{DBLP:conf/uai/2002,
  editor    = {Adnan Darwiche and
               Nir Friedman},
  title     = {UAI '02, Proceedings of the 18th Conference in Uncertainty
               in Artificial Intelligence, University of Alberta, Edmonton,
               Alberta, Canada, August 1-4, 2002},
  booktitle = {UAI},
  publisher = {Morgan Kaufmann},
  year      = {2002},
  isbn      = {1-55860-897-4}
}

@inproceedings{Muscettola04,
  author    = {Nicola Muscettola},
  title     = {{Incremental Maximum Flows for Fast Envelope Computation}},
  booktitle = {ICAPS},
  year      = {2004},
  pages     = {260-269},
  crossref  = {DBLP:conf/aips/2004},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@proceedings{DBLP:conf/aips/2004,
  editor    = {Shlomo Zilberstein and
               Jana Koehler and
               Sven Koenig},
  title     = {Proceedings of the Fourteenth International Conference on
               Automated Planning and Scheduling (ICAPS 2004), June 3-7
               2004, Whistler, British Columbia, Canada},
  booktitle = {ICAPS},
  publisher = {AAAI},
  year      = {2004},
  isbn      = {1-57735-200-9},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@inproceedings{Goldberg-02,
    author = {Dani Goldberg and Vincent Cicirello and M. Bernardine Dias 
	and Reid Simmons and Stephen Smith and Trey Smith and Anthony Stentz},
    title = {A distributed layered architecture for mobile robot coordination: 
	Application to space exploration},
    booktitle = {In Proceedings of the 3rd International NASA Workshop 
	on Planning and Scheduling for Space},
    year = {2002},
}
                  
@book{russelnorvig,
author = {S. Russel and P. Norvig},
title = {{Artificial Intelligence: A Modern Approach}},
publisher = {Prentice Hall},                  
note = {second edition}, 
year = 2003}


@article{Bachmayer:1998p5718,
author = {R Bachmayer and S Humphris and D Fornari}, 
journal = {Marine Technology Society Journal},
title = {{Oceanographic Research Using Remotely Operated Underwater Robotic Vehicles: Exploration}},
year = {1998},
month = {Jan},
}

@inproceedings{Das-2010-637,
author = "Jnaneshwar Das and Kanna Rajan and Sergey Frolov and John Ryan and Frederic Py and David A. Caron and Gaurav S. Sukhatme",
title = {{Towards Marine Bloom Trajectory Prediction for AUV Mission Planning}},
booktitle = {Intnl. Conf. on Robotics and Automation (ICRA)},
month = "May",
address = {Anchorage, Alaska},
year = "2010"
}                  
%% This BibTeX bibliography file in UTF-8 format was created using Papers.
%% http://mekentosj.com/papers/

@inproceedings{Smith2004,
author = {D. Smith}, 
booktitle = {ICAPS},
title = {{Choosing Objectives in Over-subscription Planning}},
year = {2004},
}

@article{boddy94,
author = {M. Boddy and T. Dean},
title = {{Deliberation Scheduling for Problem Solving in Time-Constrained Environments}},
journal = {Artificial Intelligence},
year = {1994},
pages = {245-285},
volume = {67(2)}
}

@techreport{anderson00,
author = {D.M. Anderson and P. Hoagland and Y. Kaoru and A.W. White},
year = {2000},
title = {Economic Impacts from Harmful Algal Blooms ({HAB}s) in the {U}nited {S}tates},
pages = {99 pp},
institution = {Woods Hole Oceanographic Institution Technical Report: WHOI 2000-11}}

@book{hoagland06,
author = {P. Hoagland and S. Scatasta},
year = {2006},
title = {{The Economic Effects of Harmful Algal Blooms}},
booktitle = {Ecology of Harmful Algae. Studies Series},
publisher = {Springer-Verlag}, 
editor = {E. Graneli and J. Turner},
chapter = {30}}

@article{pyhmm10,
author = {F. Py and S. Celorrio and K. Rajan},
journal = {Journal of Atmospheric and Ocean Technology - Ocean},
title = {Modeling Dynamic Coastal Ocean Features for In-situ
                  Identiﬁcation and Adaptive Sampling},
year = {2010},
note = {Submitted, in Review}}

@inproceedings{das10,
author = {J. Das and F. Py and T. Maughan and T. O'Reilly and
                  M. Messie and J. Ryan and K. Rajan and G. Sukhatme},
title = {{Simultaneous Tracking and Sampling of Dynamic Oceanographic
                  Features with Autonomous Underwater Vehicles and
                  Lagrangian Drifters}},
Booktitle = {{Intnl. Symp. on Experimental Robotics (ISER)}},
year = 2010,
address = {New Delhi, India}
}
                  


@inproceedings{godin06,
author = {M.A. Godin, J. G. Bellingham, K. Rajan, Y. Chao, and
                  N. Leonard},
title = {{A Collaborative Portal for Ocean Observatory Control}},
Booktitle = {Proc Oceans MTS/IEEE Conference},
address = {Boston, MA},
year = 2006
}
                  
@article{pyfronts,
title = {{Following Ocean Fronts by Dynamically Retargeting AUVs from
                  Shore}},
author = {F. Py and J. Ryan and T.O.Reilly and H. Thomas and
                  K. Rajan},
journal = {Med. Marine Sci. J, Spl. Issue on AUVs},
year = 2010,
note = {Submitted, under review}
}

@inproceedings{goac11,
title = {A Goal-oriented Autonomous Controller for Space Exploration},
author = {A. Ceballos and S. Bensalem and A. Cesta and L. de Silva
                  and S. Fratini and F. Ingrand and J. Ocon and
                  A. Orlandini and F. Py and K. Rajan and R. Rasconi
                  and M. van Winnendael},
booktitle = {Proc. 11th Symposium on Advanced Space Technologies in
                  Robotics and Automation},
month = {April},
address = {Noordwijk, the Netherlands},
year = 2011}

@misc{pioneer,
title = {Pioneer Robotics},
url = {http://www.mobilerobots.com/researchrobots/researchrobots/pioneerp3dx.aspx}}  

@inproceedings{das11,
author = {J. Das and  T. Maughan and M. McCann and M. Godin and
                  T. O'Reilly and M. Messie and F. Bahr and K. Gomes
                  and F. Py and J. Bellingham and G. Sukhatme and K. Rajan},
title = {Towards Mixed-initiative, Multi-robot Field Experiments:
                  Design, Deployment, and Lessons Learned},
booktitle = {Proc. Intelligent Robots and Systems (IROS)},
year = 2011,
address = {San Francisco, California}}


@inproceedings{das11a,
title = {Coordinated Sampling of Dynamic Oceanographic Features with
                  AUVs and Drifters},
author = {J. Das and F. Py and T. Maughan and M. Messie and
                  T. O'Reilly and J. Ryan and G. S. Sukhatme and
                  K. Rajan},
booktitle = {Proc. IROS Workshop on Robotics for Environmental
                  Monitoring (WREM2011)},
year = 2011,
address = {San Francisco, California}}

@INPROCEEDINGS{Bresina00,
	author = {J L Bresina and R Washington},
	title = {Expected utility distributions for flexible, contingent execution},
	booktitle = {In AAAI Workshop on Representation},
	year = {2000}
}


@inproceedings{Krause07Nonmyopic,
 author = {Krause, Andreas and Guestrin, Carlos},
 title = {{Nonmyopic active learning of Gaussian Processes: an exploration-exploitation approach}},
 booktitle = {Intnl. Conf. on Machine Learning},
 year = {2007},
 isbn = {978-1-59593-793-3},
 pages = {449--456},
 location = {Corvalis, Oregon},
 doi = {http://doi.acm.org/10.1145/1273496.1273553},
 publisher = {ACM},
 address = {New York, NY, USA},
 }


@inproceedings{Singh09,
 author = {Singh, Amarjeet and Krause, Andreas and Kaiser, William J.},
 title = {Nonmyopic adaptive informative path planning for multiple robots},
 booktitle = {IJCAI'09: Proceedings of the 21st international jont conference on Artifical intelligence},
 year = {2009},
 pages = {1843--1850},
 location = {Pasadena, California, USA},
 publisher = {Morgan Kaufmann Publishers Inc.},
 address = {San Francisco, CA, USA}
 }

@inproceedings{BinZhang07,
author = {B. Zhang and G. S. Sukhatme},
title = "Adaptive Sampling for Estimating a Scalar Field using a Robotic Boat and a Sensor Network",
booktitle = "IEEE International Conference on Robotics and Automation",
pages = "3673-3680",
year = "2007",
url = "http://cres.usc.edu/cgi-bin/print_pub_details.pl?pubid=524"
}


%% This BibTeX bibliography file in UTF-8 format was created using Papers.
%% http://mekentosj.com/papers/

@article{Legendre02,
author = {P Legendre and M Dale and M Fortin and J Gurevitch and M Hohn}, 
journal = {Ecography},
title = {{The consequences of spatial structure for the design and analysis of ecological field surveys}},
year = {2002},
volume = 25,
pages = {601--615}
}

@article{sergio12,
author = {S. Celorrio and F. Py and K. Rajan},
title = {Modeling Dynamic Coastal Ocean Features for In situ
                  Identiﬁcation and Adaptive Sampling},
year = {2012},
note = {in preperation}}

@inproceedings{kumar11,
title = {{Optimizing Hidden Markov Models for Ocean Feature Detection}}, 
author = {S. Kumar and S. Celorrio and F. Py and D. Khemani and K. Rajan}, 
booktitle = {Proceedings 24th Intnl. Florida AI Research Society (FLAIRS) conference},
address = {Palm Beach, FL},
year = 2011}

@BOOK{Wilkins88,
  AUTHOR={Wilkins, David E.},
  TITLE={Practical Planning: Extending the Classical AI Planning Paradigm},
  PUBLISHER={Morgan Kaufmann Publishers Inc., San Mateo, CA},
  YEAR={1988}
}

@incollection {Muscettola06,
   author = {Muscettola, Nicola},
   affiliation = {NASA Ames Research Center Moffett Field California 94035-1000},
   title = {Computing the Envelope for Stepwise-Constant Resource Allocations},
   booktitle = {Principles and Practice of Constraint Programming - CP 2002},
   series = {Lecture Notes in Computer Science},
   editor = {Van Hentenryck, Pascal},
   publisher = {Springer Berlin / Heidelberg},
   isbn = {},
   pages = {109-119},
   volume = {2470},
   url = {http://dx.doi.org/10.1007/3-540-46135-3\_10},
   year = {2006}
}

@Article{Cox97,
  author = 	 {Cox, Dennis and Cox, Laurence H. and Ensor, Katherine B.},
  title = 	 {Spatial sampling and the environment: some issues
                  and directions},
  journal = 	 {Environmental and Ecological Statistics},
  year = 	 {1997},
  volume = 	 {4},
   pages = 	 {219-233},
}

@article{Krause2008SensorPlacement,
author = {Andreas Krause and Jure Leskovec and Carlos Guestrin and Jeanne VanBriesen and Christos Faloutsos},
title = {Efficient Sensor Placement Optimization for Securing Large Water Distribution Networks},
publisher = {ASCE},
year = {2008},
journal = {Journal of Water Resources Planning and Management},
volume = {134},
number = {6},
pages = {516-526},
keywords = {Water distribution systems; Water pollution; Optimization; Algorithms},
url = {http://link.aip.org/link/?QWR/134/516/1},
doi = {10.1061/(ASCE)0733-9496(2008)134:6(516)}
}

@Book{Cressie91,
  author = 	 {Noel Cressie},
  title = 	 {Statistics for Spatial Data},
  publisher = 	 {J. Wiley \& Sons, Inc.},
  year = 	 {1991},
}

@article{Krause2008NearOptimal,
 author = {A. Krause and A. Singh and C. Guestrin},
 title = {{Near-Optimal sensor placements in Gaussian Processes: Theory, efficient algorithms and empirical studies}},
 journal = {J. Mach. Learn. Res.},
 volume = {9},
 year = {2008},
 issn = {1532-4435},
 pages = {235--284},
 publisher = {JMLR.org},
 }



%%%%%% JD bib

% This file was created with JabRef 2.6.
% Encoding: MacRoman

@INPROCEEDINGS{binney10,
  author = {J. Binney and A. Krause and G. S. Sukhatme},
  title = {Informative Path Planning for an Autonomous Underwater Vehicle},
  booktitle = {Intnl. Conf. on Robotics \& Automation},
  year = {2010}
}

@phdthesis{low09thesis,
  author = {K. H. Low},
  title = {Multi-Robot Adaptive Exploration and Mapping for Environmental Sensing
	Applications},
  school = {Carnegie Melon University},
  year = {2009},
}

@book{Rasmussen06gaussianprocesses,
  author = {C. E. Rasmussen and C.K.I. Williams},
  title = {Gaussian processes for machine learning},
  year = {2006},
address = {Cambridge},
  publisher = {MIT Press}
}

@article{matheron63,
author = {G. Matheron},
title = {Principles of geostatistics},
journal = {Economic Geology},
volume = 58,
pages = {1246-1266}, 
year = 1963}

@INPROCEEDINGS{Singh07efficientplanning,
  author = {A. Singh and A. Krause and C. Guestrin and W. Kaiser and
                  M. Batalin},
  title = {Efficient planning of informative paths for multiple robots},
  booktitle = {In IJCAI},
  year = {2007}
}

@PHDTHESIS{thompson08thesis,
  author = {David R. Thompson},
  title = {Intelligent Mapping for Autonomous Robotic Survey},
  school = {Carnegie Mellon University},
  year = {2008},
  __markedentry = {[jd]}
}
                  
@inproceedings{yanwu08,
author = {Y. Zhang and R. S. McEwen and J. P. Ryan and
                  J. G. Bellingham},
title = {{An Adaptive triggering method for capturing peak samples in a
                  thin phytoplankton layer by an autonomous underwater
                  vehicle}},
booktitle = {Proc. MTS/IEEE Oceans},
year = 2009,                  
address = {Missisipi}}

@ARTICLE{yanwu10,
author={Y. Zhang and R.S. McEwen and J.P. Ryan and J.G. Bellingham},
journal={IEEE Journal of Oceanic Engineering}, 
title={Design and Tests of an Adaptive Triggering Method for Capturing Peak Samples in a Thin Phytoplankton Layer by an Autonomous Underwater Vehicle},
year={2010},
month={Oct},
volume={35},
number={4},
pages={785-796}}


@ARTICLE{yanwuZhang2008,
  author = {Y. Zhang and J. G. Bellingham},
  title = {An efficient method of selecting ocean observing locations for capturing
	the leading modes and reconstructing the full field},
  journal = {Journal of Geophysical Research},
  year = {2008},
  volume = {113}
}

@article{yanwu11,
author = {Y. Zhang and R. S. McEwen and J. P. Ryan and
                  J. G. Bellingham and H. Thomas and C. H. Thompson and E. Rienecker},
title = {A Peak-Capture Algorithm Used on an Autonomous Underwater Vehicle
                  in the 2010 Gulf of Mexico Oil Spill Response Scientific Survey},
journal = {Journal of Field Robotics},
volume = 28,
issue = 4,
pages = {484-496},
year = 2011}

@PHDTHESIS{zhangThesis2008,
  author = {B. Zhang},
  title = {Adaptive Sampling with a Robotic Sensor Network},
  school = {University of Southern California},
  year = {2008}
}


@article{Zaimag96,
  author	= {Shlomo Zilberstein},
  title		= {Using Anytime Algorithms in Intelligent Systems},
  journal	= {AI Magazine},
  volume	= {17},
  number	= {3},
  year		= {1996},
  pages		= {73-83}
}

@article{alami:1998p820,
author = {R. Alami and R. Chatila and S. Fleury and M. Ghallab and F. Ingrand}, 
journal = {{Intnl. Journal of Robotics Research}},
title = {{An Architecture for Autonomy}},
year = {1998},
month = {Jan}
}
                  
@inproceedings{ixtet95,
author={P. Laborie and M. Ghallab}, 
booktitle={Emerging Technologies and Factory Automation, 1995. ETFA '95, Proceedings., 1995 INRIA/IEEE Symposium on}, 
title={{IxTeT: an integrated approach for plan generation and scheduling}}, 
year={1995}, 
month={October}, 
volume={1}, 
pages={485-495}}

                  
@INPROCEEDINGS{Zhang_adaptivesampling,
  author = {Bin Zhang and et al.},
  title = {Adaptive Sampling for Estimating a Scalar Field using a Robotic Boat
	and a Sensor Network},
  booktitle = {Intnl. Conf. on Robotics \& Automation},
  year = {2007}
}

@inproceedings{1031519,
 author = {Girod, Lewis and Stathopoulos, Thanos and Ramanathan, Nithya and Elson, Jeremy and Estrin, Deborah and Osterweil, Eric and Schoellhammer, Tom},
 title = {A system for simulation, emulation, and deployment of heterogeneous sensor networks},
 booktitle = {SenSys '04: Proceedings of the 2nd international conference on Embedded networked sensor systems},
 year = {2004},
 isbn = {1-58113-879-2},
 pages = {201--213},
 location = {Baltimore, MD, USA},
 doi = {http://doi.acm.org/10.1145/1031495.1031519},
 publisher = {ACM},
 address = {New York, NY, USA}
 }
 
@incollection {singh2008tracksSpringer,
   author = {A. Singh and M. Batalin and M. Stealey and V. Chen  and
                  M. Hansen and T. Harmon and G. Sukhatme and W. Kaiser},
   title = {{Mobile robot sensing for environmental applications}},
   booktitle = {Field and Service Robotics},
   series = {Springer Tracts in Advanced Robotics},
   editor = {Laugier, Christian and Siegwart, Roland},
   publisher = {Springer Berlin / Heidelberg},
   pages = {125-135},
   volume = {42},
   year = {2008},
}


@inproceedings{Rahimi03adaptivesampling,
  author = {M. Rahimi and R. Pon and W. J. Kaiser and G. S. Sukhatme and D. Estrin and M. Srivastava},
  title = {{Adaptive sampling for environmental robotics}},
  booktitle = {IEEE International Conference on Robotics and Automation},
  year = {2003},
  pages = {3537--3544},
}



@inproceedings{Deshpande+al:VLDB2004,
    author = {Deshpande, Amol and Guestrin, Carlos and Madden, Sam and Hellerstein, Joseph and Hong, Wei},
    booktitle = {International Conference on Very Large Data Bases},
    citeulike-article-id = {332969},
    citeulike-linkout-0 = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.58.5217},
    keywords = {\_cited-by-nips2007},
    posted-at = {2007-06-05 06:38:06},
    priority = {2},
    title = {Model-driven data acquisition in sensor networks},
    url = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.58.5217},
    year = {2004}
}

@article{anderson2009,
title = {Empirical models of toxigenic Pseudo-nitzschia blooms: Potential use as a remote detection tool in the Santa Barbara Channel},
author = {Clarissa R. Anderson and David A. Siegel and Raphael M. Kudela and Mark A. Brzezinskic},
journal = {Harmful Algae}, 
volume = {8},
pages = {478–-492},
year = {2009}
}
                  

@article{lane2009,
 title = {Development of a logistic regression model for the
                  prediction of toxigenic Pseudo-nitzschia blooms in Monterey Bay, California},
author = {J. Q. Lane and  P. T. Raimondi and  R. M. Kudela},
journal = {Marine Ecology Progress Series},
Volume = {383},
pages = {37–-51}, 
year = {2009}
}


@article{LongWilson97,
author = {E.R. Long and C.J. Wilson},
year = 1997,
title = {On the identification of toxic hot spots using measures of
                  sediment quality triad},
journal = {Marine Pollution Bulletin}, 
volume = 34,
pages = {373-374}
}

@article{DeOliveira,
author = {V. De Oliveira and M. D. Ecker},
year = 2002,
title = {{Bayesian hot spot detection in the presence of a spatial trend: application to total nitrogen concentration in Chesapeake Bay}},
journal = {Environmetrics}, 
volume = 13,
issue = 1,
pages = {85-101}
}
                  
@article{Brodie:2001p15787,
author = {M. Brodie and I Rish and S. Ma}, 
journal = {12th Intnl. Workshop on Distributed Systems Operation and Maintenance (DSOM)},
title = {Optimizing probe selection for fault localization},
month = {October},
year = {2001}
}

@article{Ozmutlu,
author = {H. Ozmutlu and N. Gautam and R. Barton}, 
journal = {Journal of Network and Systems Management},
title = {Managing end-to-end network performance via optimized monitoring strategies},
volume = 10,
issue = 1,
year = {2002}
}

@Article{ROMS,
author = {Alexander F. Shchepetkin and James C. McWilliams},
title = {The regional oceanic modeling system ({ROMS}): a split-explicit, free-surface, topography-following-coordinate oceanic model},
journal = {Ocean Modeling},
year = {2005},
volume = {9},
pages = {347--404},
note = {doi:10.1016/j.ocemod.2004.08.002},
}

@article{Frolov20082644,
  author = {S. Frolov and A. Baptista and M. Wilkin},
  title = {Optimizing fixed observational assets in a coastal
                  observatory},
  journal = {Continental Shelf Research},
  year = {2008},
  volume = {28},
  pages = {2644 - 2658},
  number = {19}
}

@article{barth90,
author = {Barth, Norman and Wunsch, Carl},
title = {{Oceanographic experiment design by Simulated Annealing}},
journal = {Journal of Physical Oceanography},
volume = {20},
number = {9},
pages = {1249-1263},
year = {1990}
}

@inproceedings{odss12,
title = {{An Oceanographic Decision Support System for Scientific
                  Field Experiments}},
author = {Thom Maughan and Jnaneshwar Das and Mike McCann and Mike
                  Godin and Fred Bahr and Kevin Gomes and Tom O’Reilly
                  and Frederic Py and Monique Messie and John Ryan and
                  Francisco Chavez and Jim Bellingham and Maria Fox
                  and Kanna Rajan},
booktitle = {IEEE Oceans},
address = {Salt Lake City, Utah},                  
year = 2012,
note = {Submitted; under review}
}


@article{bartak2002,
author = {R. Bartak},
title = {Modelling soft constraints: a survey},
year =  2002,
journal = {Neural Network World},
volume = 12,
number = 5,
pages = {421-431}}


@article{bistarelli99,
author = {S. Bistarelli and U. Montanari and F. Rossi and T. Schiex
                  and G. Verfaillie and H. Fargier},
title = {Semiring-based CSPs and valued CSPs: Frameworks, properties,
                  and comparison},
journal = {Constraints},
volume = 4,
pages = {199-240}, 
year = 1999}
                  
@article{Incze2009, 
title = "Optimized deployment of autonomous underwater vehicles for characterization of coastal waters", 
journal = "Journal of Marine Systems", 
volume = "78", 
number = "Supplement 1", 
pages = "S415 - S424", 
year = "2009", 
note = "Coastal Processes: Challenges for Monitoring and Prediction", 
issn = "0924-7963", 
doi = "DOI: 10.1016/j.jmarsys.2009.01.039", 
url = "http://www.sciencedirect.com/science/article/B6VF5-4VR2451-K/2/00eb2b31a4b1ef323793621057518d75", 
author = "Michael L. Incze", 
} 

@INPROCEEDINGS{Popa2005, 
author={Popa, D.O. and Sanderson, A.C. and Vadiraj Hombal and Komerska, R.J. and Mupparapu, S.S. and Blidberg, R. and Chappel, S.G.}, 
booktitle={Intelligent Robots and Systems, 2005. (IROS 2005). 2005 IEEE/RSJ International Conference on}, 
title={Optimal sampling using singular value decomposition of the parameter variance space}, 
year={2005}, 
month={August}, 
pages={ 3131 - 3136}, 
doi={10.1109/IROS.2005.1545135}, 
} 

@ARTICLE{Willcox2001, 
author = {J. S. Willcox and J. G. Bellingham and Y. Zhang and A. B. Baggeroer}, 
title = {Performance metrics for oceanographic surveys with autonomous underwater vehicles}, 
journal = {IEEE J. Oceanic Engineering}, 
year = {2001}, 
volume = {26}, 
pages = {711-725}, 
} 

@INPROCEEDINGS{Willcox1996, 
author = {J. S. Willcox and Y. Zhang and J. G. Bellingham and J. Marshall}, 
title = {AUV Survey Design Applied to Oceanographic Deep Convection}, 
booktitle = {Proceedings of the MTS/IIEEE Oceans Conference}, 
year = {1996}, 
} 


@INPROCEEDINGS{Sun2010, 
author={Feng Sun and Wen Xu and Liling Jin and Jianlong Li}, 
booktitle={OCEANS 2010 IEEE - Sydney}, 
title={Path planning of Autonomous Underwater Vehicles for optimal environmental sampling}, 
year={2010}, 
month={may}, 
pages={1-4}
} 

@ARTICLE{Leonard07, 
author={Leonard, N.E. and Paley, D.A. and Lekien, F. and Sepulchre, R. and Fratantoni, D.M. and Davis, R.E.}, 
journal={Proceedings of the IEEE}, 
title={Collective Motion, Sensor Networks, and Ocean Sampling}, 
year={2007}, 
month={January}, 
volume={95}, 
number={1}, 
pages={48-74}, 
doi={10.1109/JPROC.2006.887295}, 
ISSN={0018-9219}}

@article {Leonard10,
author = {N.E. Leonard and D.A. Paley and R.E. Davis and D.M. Fratantoni and F. Lekien and F. Zhang},
title = {Coordinated control of an underwater glider fleet in an adaptive ocean sampling field experiment in Monterey Bay},
journal = {Journal of Field Robotics},
volume = {27},
number = {6},
publisher = {Wiley Subscription Services, Inc., A Wiley Company},
issn = {1556-4967},
doi = {10.1002/rob.20366},
pages = {718--740},
year = {2010},
}

@article{Yoerger07,
  author = {Dana R. Yoerger and Michael Jakuba and Albert M. Bradley and Brian Bingham},
  title =  {Techniques for deep sea near bottom survey using an Autonomous Underwater Vehicle},
  journal = {The International Journal of Robotics Research},
  year =  {2007},
  volume = {26},
  number = {1},
  pages = {41-54},
  month = {January}
}

@inproceedings{Ferri08,
author = {Ferri, G. and Jakuba, M.V. and Yoerger, D.R.},
booktitle = {IEEE International Conference on Robotics and Automation},
title = {A novel method for hydrothermal vents prospecting using an autonomous underwater robot},
year = {2008},
month = {may},
pages = {1055-1060}
}

@article{Rigby10,
AUTHOR = "Paul Rigby and Oscar Pizarro and Stefan B. Williams",
TITLE = "Toward adaptive benthic habitat mapping using gaussian process classification.",
JOURNAL = "Journal of Field Robotics",
PAGES = {741-758},
YEAR = {2010}  
}
                  
@inproceedings{Rigby07,
author = {Rigby, P. and Williams, S. B. and Pizarro, O. and Colquhoun, J.},
year = 2007, 
month = {September},
title = {Effective benthic surveying with autonomous underwater vehicles},
booktitle = {MTS/IEEE Oceans},
address = {Vancouver, Canada}}


@article{Vivo05,
title = "Automatic program for peak detection and deconvolution of multi-overlapped chromatographic signals: Part I: Peak detection",
journal = "Journal of Chromatography A",
volume = "1096",
number = "1-2",
pages = "133 - 145",
year = "2005",
note = "Chemical Separations and Chemometrics",
issn = "0021-9673",
doi = "DOI: 10.1016/j.chroma.2005.03.092",
url = "http://www.sciencedirect.com/science/article/pii/S0021967305006424",
author = "G. Vivó-Truyols and J.R. Torres-Lapasió and A.M. van Nederkassel and Y. Vander Heyden and D.L. Massart",
}

@article{harvey10,
author = {Harvey, J. B. J. and Rodriguez, R. and Hoy, M.},
title = {A molecular diagnostic approach to detection of native and invasive marine species propagules from ballast and open waters in Puget Sound},
journal = {Journal of Experimental Marine Biology and Ecology},
note = {in preparation}}

@article{harvey06,
author = {Harvey, J. B. J. and Goff, L. J.},
year =  2006,
title = {A reassessment of species boundaries in Cystoseira and
                  Halidrys (Fucales, Phaeophyceae) along the North
                  American west coast},
journal = {Journal of Phycology},
volume = 42,
pages = {707-720}}


@article{ryan01,
author = {Ryan, J.P and J.A Yoder and D.W Townsend},
year = 2001, 
title = {Influence of a Gulf Stream warm-core ring on water mass and
                  chlorophyll distributions along the southern flank of Georges
                  Bank},
journal = {Deep-Sea Research II},
volume = 48,
pages = {159-178}}

@article{marinone08,
author = {Marinone, S. G. and M. J. Ulloa and A. Pares-Sierra and M. F. Lavin and R. Cudney-Bueno},
year = 2008,
title = {Connectivity in the northern Gulf of California from particle tracking in a three-dimensional numerical model},
journal = {Journal of Marine Systems},
volume = 71,
pages = {149-158}
}

@article{scholin99,
author = {Scholin , C. A. and R. Marin and P. E. Miller and
                  G. Doucette and C. Powell and J. Howard and
                  P. Haydock and J. Ray},
year = 1999,
title = {Application of DNA probes and a receptor binding assay for
                  detection of Pseudo-nitzschia (Bacillariophyceae)
                  species and domoic acid activity in cultured and
                  natural samples},
journal = {Journal of Phycology},
volume = 35,
pages = {1356-1367}}

@article{jones08,
author = {Jones, W. J. and C. M. Preston and R. Marin III and
                  C. A. Scholin and R. C. Vrijenhoek},
year = 2008, 
title = {A robotic molecular method for in situ detection of marine
                  invertebrate larvae},
journal = {Molecular Ecology Resources},
volume = 8,
issue = 3,
pages = {540-550}}
                  
@article{scholin09,
author = {C. Scholin and G. Doucette and S. Jensen and B. Roman and
                  D. Pargett and R. Marin III and C. Preston and
                  W. Jones and J. Feldman and C. Everlove and
                  A. Harris and N. Alvarado and E. Massion and
                  J. Birch and D. Greenfield and R. Vrijenhoek and
                  C. Mikulski and K. Jones},
year = 2009, 
title = {{Remote detection of marine microbes, small invertebrates, harmful algae, and biotoxins using the Environmental Sample Processor (ESP)}}, 
journal = {Oceanography}, 
volume = 22,
issue = 2,
pages = {158–167}}

@article{goffredi06,
author = {Goffredi S. K. and W. J. Jones and C. A. Scholin and
                  R. Marin and R. C. Vrijenhoek},
year = 2006, 
title = {Molecular detection of marine invertebrate larvae},
journal = {Marine Biotechnology},
volume = 8,
pages = {149-160}}


@article{rucool11,
author = {S. Glenn and J. Kohut and J. McDonnell and D. Seidel and D. Aragon
                  and T. Haskins and E.  Handel and C. Haldeman and
                  I. Heifetz and J. Kerfoot and E. Lemus and
                  S. Lictenwalder and L. Ojanen and H. Roarty and
                  Atlantic Crossing Students and C. Jones and D. Webb and
                  O. Schofield},
title = {{The Trans-Atlantic Slocum glider
                  expeditions: A catalyst for undergraduate
                  participation in ocean science and
                  technology}},
year = 2011,
journal = {{Marine Technology Society}},
volume = 45,
pages = {75-90}}

@misc{NDDL,
title = {{NDDL Reference}},
url = {http://code.google.com/p/europa-pso/wiki/NDDLReference},
year = 2011,
institution = {NASA Ames Research Center}}
                  
                  
@incollection{carreras06,
author = {M. Carreras and P. Ridao and R. Garcia and J. Battle},
title = {{Behaviour Control of UUV's}},
year = 2006,
booktitle = {Advances in Unmanned Marine Vehicles},
editor = {G. N. Roberts and R. Sutton},
chapter = 4,
publisher = {IEE}
}

@article{Ridao:2000,
author = {P Ridao and J Yuh and J Batlle and K Sugihara}, 
journal = {IEEE/RSJ International Conference on Intelligent Robots and
                  Systems (IROS)},
title = {On AUV control architecture},
year = {2000},
month = {Jan},
rating = {0}
}


@inproceedings{mcgann2009,
author = {C. McGann and E. Berger and J. Boren and S. Chitta and
                  B. Gerkey and S. Glaser and E. Marder-Eppstein and
                  B. Marthi and W. Meeussen and T. Pratkanis and
                  M. Wise},
title = {{Model-based, Hierarchical Control of a Mobile Manipulation Platform}},
booktitle = {4th Workshop on Planning and Plan Execution for Real World Systems, ICAPS},
year = {2009}
}

@misc{trexcode,
howpublished ={[Online] Available: http://code.google.com/p/trex2-agent/},
title = {{T-REX Open Source archive}},
url = {http://code.google.com/p/trex2-agent/},
institution = MBARI}


@inproceedings{fronts11,
author = {J. Gottlieb and R. Graham and T. Maughan and F. Py and
                  J. Ryan and G. Elkaim and K. Rajan},
title =  {{An Experimental Momentum-based Front Detection Method for Autonomous
  Underwater Vehicles}},
booktitle = {IEEE International Conference on Robotics and
                  Automation},
year = 2012}

@article{das11b,
author = {J. Das and F. Py and T. Maughan and M. Messie and
                  T. O'Reilly and J. Ryan and G. S. Sukhatme and
                  K. Rajan},
title = {{Coordinated Sampling of Dynamic Oceanographic Features with AUVs and Drifters}},
journal = {{Intnl. J. of Robotics Research}},
note = {Accepted, to appear},
year = 2012}                  

@inproceedings{chitre08,
title = {{DSAAV - A distributed software architecture for autonomous
                  vehicles}},
author = {M. Chitre},
booktitle = {MTS/IEEE Oceans},
pages = {1-10},
year = 2008,
month = {September},
address = {Quebec City, Canada}}

@article{CayulaCornillon1995,
	Annote = {doi: 10.1175/1520-0426(1995)012<0821:MIEDFS>2.0.CO;2},
	Author = {Cayula, Jean-Fran{\c c}ois and Cornillon, Peter},
	Booktitle = {Journal of Atmospheric and Oceanic Technology},
	Da = {1995/08/01},
	Date = {1995/08/01},
	Date-Added = {2011-09-14 05:55:26 +0000},
	Date-Modified = {2011-09-14 05:55:43 +0000},
	Doi = {10.1175/1520-0426(1995)012<0821:MIEDFS>2.0.CO;2},
	Isbn = {0739-0572},
	Journal = {Journal of Atmospheric and Oceanic Technology},
	Journal1 = {J. Atmos. Oceanic Technol.},
	M3 = {doi: 10.1175/1520-0426(1995)012<0821:MIEDFS>2.0.CO;2},
	Month = {2011/09/13},
	Number = {4},
	Pages = {821--829},
	Publisher = {American Meteorological Society},
	Title = {{Multi-Image Edge Detection for SST Images}},
	Ty = {JOUR},
	Url = {http://dx.doi.org/10.1175/1520-0426(1995)012<0821:MIEDFS>2.0.CO;2},
	Volume = {12},
	Year = {1995},
	Year1 = {1995},
	Bdsk-Url-1 = {http://dx.doi.org/10.1175/1520-0426(1995)012%3C0821:MIEDFS%3E2.0.CO;2}}

@article{CayulaCornillon1992,
	Author = {{Cayula}, J.-F. and {Cornillon}, P.},
	Date-Added = {2011-09-14 05:51:35 +0000},
	Date-Modified = {2011-09-14 05:52:50 +0000},
	Journal = {{Journal of Atmospheric and Oceanic Technology}},
	Month = {feb},
	Pages = {{67-80}},
	Title = {"{Edge Detection Algorithm for SST Images}"},
	Volume = {9},
	Year = {1992}}

@conference{FrolovEtAl2011,
	Address = {South Lake Tahoe},
	Author = {Sergey Frolov and John P. Ryan and James G. Bellingham},
	Booktitle = {Eastern Pacific Ocean Conference},
	Date-Added = {2011-09-13 16:50:33 +0000},
	Date-Modified = {2011-09-13 16:51:55 +0000},
	Title = {"How do convergent and divergent fronts structure the cross-shore gradients of physical, chemical, and ecosystem properties in Monterey Bay?"},
	Year = {2011}}

@article{ZhangEtAl2010,
	Author = {Zhang, Yanwu and Bellingham, James G. and Chao, Yi},
	Journal = {Journal of Atmospheric and Oceanic Technology},
	Number = {3},
	Pages = {481--506},
	Publisher = {American Meteorological Society},
	Title = {Error Analysis and Sampling Strategy Design for Using Fixed or Mobile Platforms to Estimate Ocean Flux},
	Volume = {27},
	Year = {2010},
	Year1 = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1175/2009JTECHO700.1}}

@inproceedings{ZhangEtAl2004,
	Author = {Bin Zhang and Sukhatme, G.S. and Requicha, A.A.},
	Booktitle = {Intelligent Robots and Systems, 2004. (IROS 2004). Proceedings. 2004 IEEE/RSJ International Conference on},
	Date-Added = {2011-09-07 18:36:33 +0000},
	Date-Modified = {2011-09-07 18:36:39 +0000},
	Doi = {10.1109/IROS.2004.1389546},
	Month = {sept.-2 oct.},
	Pages = {1115 - 1122 vol.2},
	Title = {Adaptive sampling for marine microorganism monitoring},
	Volume = {2},
	Year = {2004},
	Bdsk-Url-1 = {http://dx.doi.org/10.1109/IROS.2004.1389546}}

@article{BelkinOreilly2009,
	Author = {Igor M. Belkin and John E. O'Reilly},
	Date-Added = {2011-09-06 21:59:14 +0000},
	Date-Modified = {2011-09-06 21:59:23 +0000},
	Doi = {DOI: 10.1016/j.jmarsys.2008.11.018},
	Issn = {0924-7963},
	Journal = {Journal of Marine Systems},
	Keywords = {Front detection},
	Note = {Special Issue on Observational Studies of Oceanic Fronts},
	Number = {3},
	Pages = {319 - 326},
	Title = {An algorithm for oceanic front detection in chlorophyll and SST satellite imagery},
	Url = {http://www.sciencedirect.com/science/article/pii/S0924796309000682},
	Volume = {78},
	Year = {2009},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0924796309000682},
	Bdsk-Url-2 = {http://dx.doi.org/10.1016/j.jmarsys.2008.11.018}}

@article{BelkinEtAl2009,
	Author = {Igor M. Belkin and Peter C. Cornillon and Kenneth Sherman},
	Date-Added = {2011-09-06 21:54:35 +0000},
	Date-Modified = {2011-09-06 21:54:47 +0000},
	Doi = {DOI: 10.1016/j.pocean.2009.04.015},
	Issn = {0079-6611},
	Journal = {Progress In Oceanography},
	Note = {Comparative Marine Ecosystem Structure and Function: Descriptors and Characteristics},
	Number = {1-4},
	Pages = {223 - 236},
	Title = {Fronts in Large Marine Ecosystems},
	Volume = {81},
	Year = {2009},
	Bdsk-Url-2 = {http://dx.doi.org/10.1016/j.pocean.2009.04.015}}

@inproceedings{Hover2009,
	Author = {Hover, F.S.},
	Booktitle = {Intelligent Robots and Systems, 2009. IROS 2009. IEEE/RSJ International Conference on},
	Date-Added = {2011-09-06 20:09:12 +0000},
	Date-Modified = {2011-09-06 20:09:25 +0000},
	Doi = {10.1109/IROS.2009.5354367},
	Keywords = {agent trajectories;data assimilation;extended Kalman filter;forecast errors;mobile environmental monitoring systems;mobile sensor path planning;path planning;Kalman filters;data assimilation;mobile robots;monitoring;path planning;sensors;},
	Month = {oct.},
	Pages = {213 -218},
	Title = {Path planning for data assimilation in mobile environmental monitoring systems},
	Year = {2009},
	Bdsk-Url-1 = {http://dx.doi.org/10.1109/IROS.2009.5354367}}

@inproceedings{dorado2004,
	Author = {Podder, T.K. and Sibenac, M. and Thomas, H. and Kirkwood, W.J. and Bellingham, J.G.},
	Booktitle = {OCEANS '04. MTTS/IEEE TECHNO-OCEAN '04},
	Date-Added = {2011-09-02 04:01:52 +0000},
	Date-Modified = {2011-09-02 04:02:00 +0000},
	Doi = {10.1109/OCEANS.2004.1405576},
	Month = {November},
	Pages = {856 - 862 Vol.2},
	Title = {Reliability growth of autonomous underwater vehicle-Dorado},
	Volume = {2},
	Year = {2004},
	Bdsk-Url-1 = {http://dx.doi.org/10.1109/OCEANS.2004.1405576}}

@inproceedings{dorado,
	Author = {Sibenac, M. and Kirkwood, W.J. and McEwen, R. and Shane, F. and Henthorn, R. and Gashler, D. and Thomas, H.},
	Booktitle = {OCEANS '02 MTS/IEEE},
	Date-Added = {2011-09-02 03:58:07 +0000},
	Date-Modified = {2011-09-02 03:58:20 +0000},
	Doi = {10.1109/OCEANS.2002.1193266},
	Month = {October},
	Pages = {167 - 172 vol.1},
	Title = {Modular AUV for routine deep water science operations},
	Volume = {1},
	Year = {2002},
	Bdsk-Url-1 = {http://dx.doi.org/10.1109/OCEANS.2002.1193266}}

@misc{lcs,
	Author = {Sergey Frolov},
	Date-Added = {2011-08-18 11:31:51 -0700},
	Date-Modified = {2011-08-18 11:34:49 -0700},
	Howpublished = {personal communication},
	Keywords = {langrangian coherent structures, surface currents, fronts},
	Title = {LCS Analysis of Monterey Bay surface currents},
	Year = {2011}}

@misc{cencoos,
title = {{CENCoos}},
Howpublished = {[Online] Available: http://www.cencoos.org/},
url = {http://www.cencoos.org/}
}
                  
@misc{canon,
	Title = {{"CANON: Controlled, Agile and Novel Observing Network"}},
	Url = {http://www.mbari.org/canon/},
	Bdsk-Url-1 = {http://www.mbari.org/canon/}}
                  
@misc{ooi,
title = {{OOI: Ocean Observing Initiative}},
url = {http://www.oceanobservatories.org/}}

@book{Gelb,
	Author = {Arthur Gelb},
	Date-Added = {2011-08-16 15:04:05 -0700},
	Date-Modified = {2011-08-16 15:10:24 -0700},
	Publisher = {MIT Press},
	Read = {Yes},
	Title = {Applied Optimal Estimation},
	Year = {1974}}
               
@unpublished{Zhang2011,
	Author = {Y. Zhang and M. Godin and J. G. Bellingham and J. P. Ryan},
	Month = {July},
	Title = {Ocean Front Detection and Tracking by an Autonomous Underwater Vehicle},
	Year = {2011}}

@inproceedings{CruzMatos2010b,
	Author = {Cruz, N.A. and Matos, A.C.},
	Booktitle = {OCEANS 2010},
	Month = {sept.},
	Pages = {1 -6},
	Title = {Adaptive sampling of thermoclines with Autonomous Underwater Vehicles},
	Year = {2010}}
                  
@techreport{Benjamin:2004,
author = {M Benjamin}, 
institution = {Computer Science and Artificial Intelligence Laboratory},
title = {The Interval Programming Model for Multi-Objective Decision Making},
year = {2004},
month = {Jan}
}
                  
                  
@article{Benjamin2006,
author = {M. Benjamin and M. Grund and P. Newman}, 
journal = {Robotics and Automation},
title = {Multi-objective optimization of sensor quality with efficient marine vehicle task execution},
year = {2006},
month = {Jan}
}

@inproceedings{Eickstedt2007,
author = {D. P. Eickstedt and M. R. Benjamin and D Wang and H. Schmidt}, 
booktitle={Robotics and Automation, 2007 IEEE International Conference on}, 
title = {Behavior Based Adaptive Control for Autonomous Oceanographic Sampling},
year = {2007},
pages={4245-4250},                   
month = {April}}
                  
@inproceedings{Eickstedt2006,
author={D. P. Eickstedt and M. R. Benjamin and  H. Schmidt and J.J. Leonard}, 
booktitle={Intelligent Robots and Systems, 2006 IEEE/RSJ International Conference on}, 
title={Adaptive Control of Heterogeneous Marine Sensor Platforms in an Autonomous Sensor Network}, 
year={2006}, 
pages={5514-5521}}

@inproceedings{CruzMatos2010,
Author = {Cruz, N.A. and Matos, A.C.},
Booktitle = {OCEANS 2010 IEEE},
address = {Sydney, Australia},
Date-Added = {2011-07-22 13:37:09 -0700},
Date-Modified = {2011-07-25 12:59:45 -0700},
Doi = {10.1109/OCEANSSYD.2010.5603883},
Month = {may},
Pages = {1 -6},
Title = {Reactive AUV motion for thermocline tracking},
Year = {2010}}


@inproceedings{Petillo2010,
	Author = {Petillo, S. and Balasuriya, A. and Schmidt, H.},
	Booktitle = {OCEANS 2010 IEEE - Sydney},
	Date-Added = {2011-07-22 13:36:51 -0700},
	Date-Modified = {2011-07-25 13:00:47 -0700},
	Doi = {10.1109/OCEANSSYD.2010.5603513},
	Month = {may},
	Pages = {1 -9},
	Title = {Autonomous adaptive environmental assessment and feature tracking via autonomous underwater vehicles},
	Year = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1109/OCEANSSYD.2010.5603513}}

@inproceedings{Zhang2010b,
	Author = {Yanwu Zhang and Bellingham, J.G. and Godin, M. and Ryan, J.P. and McEwen, R.S. and Kieft, B. and Hobson, B. and Hoover, T.},
	Booktitle = {OCEANS 2010},
	Date-Added = {2011-07-22 13:35:14 -0700},
	Date-Modified = {2011-07-25 13:01:10 -0700},
	Doi = {10.1109/OCEANS.2010.5664545},
	Month = {sept.},
	Pages = {1 -4},
	Title = {Thermocline tracking based on peak-gradient detection by an autonomous underwater vehicle},
	Year = {2010}}

@article{Belkin2009223,
	Author = {Igor M. Belkin and Peter C. Cornillon and Kenneth Sherman},
	Journal = {Progress In Oceanography},
	Note = {Comparative Marine Ecosystem Structure and Function: Descriptors and Characteristics},
	Number = {1-4},
	Pages = {223 - 236},
	Title = {Fronts in Large Marine Ecosystems},
	Volume = {81},
	Year = {2009}}

@article{ryan2010,
	Author = {J. P. Ryan and A.M. Fischer and R.M. Kudela and M.A. Mcmanus and J.S. Myers and J. D. Paduan and C.M. Ruhsam and C.B. Woodson and Y. Zhang},
	Issue = C12,
	Journal = {J. Geophys. Research},
	Title = {Recurrent frontal slick patterns of a coastal ocean upwelling shadow},
	Volume = 115,
	Year = 2010}

@article{haney85,
	Author = {J.C. Haney and P.A. McGillivary},
	Issue = 4,
	Journal = {Bio. Oceanography},
	Pages = {401-430},
	Title = {Midshelf fronts in the South Atlantic Bight and their influence on seabird distribution and seasonal abundance},
	Volume = 3,
	Year = 1985}

@article{pingree74,
author = {R. D. Pingree and G. R. Forster and G. K. Morrison},
year = 1974,
title = {Turbulent Convergent Tidal Fronts},
journal = {Journal of the Marine Biological Association of the United Kingdom}, 
volume = 54, 
pages = {469-479}}

@article{pingree78,
author = {R. D. Pingree and D. K. Griffiths},
title = {Tidal Fronts on the Shelf Seas Around the British Isles},
journal = {JGR},
year = 1978,
volume = 83,
issue = C9,
pages = {4615-4622}
}

@article{olson94,
author = {D.B. Olson and G.L. Hitchcock and A.J. Mariano and
                  C.J. Ashjan and G. Peng and R.W. Nero and G.P. Podesta},
year = 1994,
title = {Life on the edge: marine life and fronts},
journal = {Oceanography},
pages = {52-60},
volume = 7,
issue = 2}

@book{longhurst06,
author = {A.R. Longhurst}, 
year = 2006, 
title = {Ecological Geography of the Sea}, 
publisher = {Academic Press},
pages = 560}

@article{asaro11,
author = {E. D’Asaro and C. Lee and L. Rainville and R. Harcourt and
                  L. Thomas},
title = {Enhanced Turbulence and Energy Dissipation at Ocean Fronts},
journal = {Science},
month = {March},
year = 2011,
volume = 10}


@inproceedings{CruzMatos2010,
Author = {N.A. Cruz and A.C. Matos},
Booktitle = {Proc. OCEANS 2010 IEEE - Sydney},
Month = {May},
Pages = {1 -6},
Title = {Reactive AUV motion for thermocline tracking},
Year = {2010}}


@ARTICLE{1459026, 
author={Marcello, J. and Marques, F. and Eugenio, F.}, 
journal={IEEE Transactions on Geoscience and Remote Sensing}, 
title={Automatic tool for the precise detection of upwelling and filaments in remote sensing imagery}, 
year={2005}, 
month={july}, 
volume={43}, 
number={7}, 
pages={1605-1616}, 
ISSN={0196-2892}}

@article{hopkins10,
author = {J. Hopkins and P. Challenor and A G. P. Shaw},
year = 2010,
title = {{A new Statistical Modeling approach to ocean front detection
                  from SST satellite images}},
journal = {J. Atmos. and Ocean. Technology}, 
volume = 27, 
pages = {173-191}
}

@article{Oram20082397,
title = "Gradient-based edge detection and feature classification of sea-surface images of the Southern California Bight",
journal = "Remote Sensing of Environment",
volume = "112",
number = "5",
pages = "2397 - 2415",
year = "2008",
note = "Earth Observations for Terrestrial Biodiversity and Ecosystems Special Issue",
issn = "0034-4257",
doi = "10.1016/j.rse.2007.11.010",
author = "John J. Oram and James C. McWilliams and Keith D. Stolzenbach"
}

@ARTICLE{61207, 
author={Payton, D.W. and Rosenblatt, J.K. and Keirsey, D.M.}, 
journal={Systems, Man and Cybernetics, IEEE Transactions on}, 
title={Plan guided reaction}, 
year={1990}, 
month={nov/dec}, 
volume={20}, 
number={6}, 
pages={1370-1382}}

@article{Rosenblatt02,
author = {J Rosenblatt and S Williams and H Durrant-Whyte}, 
journal = {Information Sciences},
title = {A behavior-based architecture for autonomous underwater exploration},
volume = 145,                  
pages = {69–87},
year = {2002},
month = {Jan},
}

@inproceedings{364028, 
author={Borges Sousa, J. and Lobo Pereira, F. and Pereira da Silva, E.}, 
booktitle={OCEANS '94. 'Oceans Engineering for Today's Technology and Tomorrow's Preservation.' Proceedings}, 
title={A dynamically configurable architecture for the control of autonomous underwater vehicles}, 
year={1994}, 
month={September}, 
volume={2}, 
pages={131-136}}

@inproceedings{goldberg11,
author = {D. Goldberg},
title = {Huxley: A Flexible Robot Control Architecture for Autonomous
                  Underwater Vehicles},
booktitle = {IEEE OCEANS}, 
address = {Santander, Spain},
month = {June},
year = 2011}

@article{olaya11,
title = {{An On-line Utility based Approach for Sampling Dynamic Ocean Fields}},
author = {A.G. Olaya and F. Py and J. Das and K. Rajan},
journal = {IEEE Journal of Ocean Engineering},
note = {Accepted for publication},                  
year = 2011}

@article{Lumpkin2007,
author = {R. Lumpkin and M. Pazos},
title = {Measuring surface currents with Surface Velocity Program drifters: the instruments, its data and some recent results},
journal = {Lagrangian Analysis and Prediction of Coastal and Ocean Dynamics}, 
Publisher = {Cambridge University Press},
year = {2007}
}

@article{davis1985,
	Author = {Russ E. Davis},
	journal = {Journal of Geophysical Research},
	Pages = {4741-4755},
	Title = {{Drifter observations of coastal surface currents during CODE: The method and descriptive view}},
	Volume = {90},
	Year = {1985}
}

@article{molcard03,
author = {A. Molcard and L. I. Piterbarg and A. Griffa and T. M. Ozgokmen and A.J. Mariano},
year = 2003,
title = {Assimilation of drifter observations for the reconstruction of the Eulerian circulation field},
journal = {J. Geophys. Res},
volume = {108(C3)}, 
pages = {1 1-1 21}
}

@article{wulff10,
author = {T. Wulff and S. Lehmenhecker and U. Hoge},
title = {{Development and Operation Of an AUV-Based Water Sample
                  Collector}},
journal = {Sea Technology Magazine},
volume = 51,
issue = 12,
pages = {15-19},
month = December,
year = 2010}
                  


@article{cluster1,
title = "Variability in spectral backscatter estimated from satellites and its relation to in situ measurements in optically complex coastal waters",
author = "M.A. Moline and R. Arnone and T. Bergmann and S. Glenn, M.J. Oliver and C. Orrico and O. Schofield and S. Tozzi",
journal = "Int. J. of Remote Sensing",
volume = 25,
pages = "1465--1468",
year = 2004,
}

@article{hierarch,
author="S.C. Johnson",
year= 1967,
title="Hierarchical Clustering Schemes",
journal="Psychometrika", 
volume=2,
pages="241--254",
}


@mastersthesis{cluster2,
title="The effect of particle size distribution on spectral backscattering coefficient",
author="E.N. Hildebrand",
school="Dalhousie University",
year=1999,
}

@article{heyer,
author="L.J. Heyer and S. Kruglyak and S. Yooseph",
title="Exploring Expression Data: Identification and Analysis of Coexpressed Genes", 
journal="Genome Research",
volume= 9,
pages="1106--1115",
year=1999,
}

@article{chavez,
author="F.P. Chavez and J. Ryan and S.E. Lluch-Cota and M. Niquen",
year=2003,
title="From anchovies to sardines and back: multidecadal change in the Pacific Ocean", 
journal="Science",
volume=299,
number=5604,
pages="217--221",
}

@article{johnson,
author="K.S. Johnson and F.P. Chavez and G.E. Friederich",
year=1999,
title="Continental-shelf sediment as a primary source of iron for coastal phytoplankton",
journal="Nature",
volume= 398,
number= 6729,
pages="697--700",
}

@article{maldonado,
author="M.T. Maldonado and M.P. Hughes and E.L. Rue and M.L. Wells",
year=2002,
title="The effect of Fe and Cu on growth and domoic acid production by Pseudo-nitzschia multiseries and Pseudo-nitzschia australis",
journal="Limnol Oceanography",
volume=47,
number=2,
pages="515--526",
}


@inproceedings{iverson04,
	Address = {Las Vegas, NV, USA},
	Author = {D. L. Iverson},
	Booktitle = {Int. conf. on Aritificial Intelligence},
	Month = {jun},
	Title = {Inductive System Health Monitoring},
	Year = {2004}}

@article{ryan05b,
  author = {J. P. Ryan and H. M. Dierssen and R. M. Kudela and C. A. Scholin
	and K. S. Johnson and J. M. Sullivan and A. M. Fischer and E. V.
	Rienecker and P. R. McEnaney and F. P. Chavez},
  title = {Coastal ocean physics and red tides: an example from Monterey Bay,
	California},
  journal = {Oceanography},
  year = {2005},
  volume = {18},
  pages = {246-255},
  month = {March}
}

@article{hartigan79,
	Author = {J. A. Hartigan and M. A. Wong},
	Journal = {Applied Statistics},
	Number = {1},
	Pages = {100--108},
	Title = {A $K$-Means Clustering Algorithm},
	Volume = {28},
	Year = {1979}}

@techreport{berkhin02survey, 
author = "P. Berkhin", 
title = "Survey Of Clustering Data Mining Techniques", 
institution = "Accrue Software", 
address = "San Jose, CA", 
year = "2002"
}

@article{pr2,
author = {WillowGarage},
title = {{http://www.willowgarage.com/pages/software/trex}},
year = {2008}
}

@inproceedings{Meeussen:2010dn,
author = {W. Meeussen and M. Wise and S. Glaser  and S. Chitta  and
                  C. McGann  and P. Mihelich and E. Marder-Eppstein
                  and M. Muja  and V. Eruhimov  and T. Foote and
                  J. Hsu and R. B. Rusu and B. Marthi and G. Bradski
                  and K. Konolige  and B. Gerkey and E. Berger},
title = {{Autonomous Door Opening and Plugging In with a Personal Robot}},
booktitle = {IEEE International Conference on Robotics and Automation (ICRA)},
year = {2010},
pages = {729--736},
publisher = {IEEE},
address = {Anchorage, AK},
month = may
}

@inproceedings{degroote11,
author = {A. Degroote and S. Lacroix},
title = {ROAR: Resource oriented agent architecture for the autonomy
                  of robots},
booktitle = {IEEE International Conference on Robotics and Automation
                  (ICRA)},
year = 2011,
address = {Shanghai}}

@book{computersthought,
author = {E.A. Feigenbaum and J. Feldman},
title = {Computers and Thought},                  
publisher = {McGraw-Hill},
address = {New York, NY},
year = 1963}

@inproceedings{green69,
author = {C. Green},
title = {{Application of theorem proving to problem solving}},
booktitle = {Proceedings of the International Joint Conf. on AI (IJCAI)}, 
address = {Washington, D.C.},
month = May,
year =  1969}

@article{strips71,
author = {R.E. Fikes and N.J. Nilsson},
year = 1971,
title = {{STRIPS: A new approach to the application of theorem proving to problem solving}}, 
journal = {Artificial Intelligence},
volume = 2, 
pages = {189–205}}

@article{Haigh98,
author = {K. Haigh and M. Veloso}, 
journal = {Autonomous Robots},
title = {{Interleaving Planning and Robot Execution for Asynchronous User Requests}},
year = {1998},
publisher = {Springer Netherlands},
pages = {79-95},
volume = {5},
issue = {1},
month = {Jan}}

@article{AmbrosIngerson88,
author = {J. Ambros-Ingerson and S. Steel}, 
journal = {Proc. 7th American Assoc. for Artificial Intelligence (AAAI)},
title = {{Integrating Planning, Execution and Monitoring}},
year = {1988},
month = {Jan}}

@article{Knight01,
author = {R Knight and F Fisher and T Estlin and B Engelhardt and S. Chien}, 
journal = {Proc. Intelligen Robots and Systems (IROS)},
title = {{Balancing Deliberation and Reaction, Planning and Execution for Space Robotic Applications}},
year = {2001},
month = {Jan},
pages={2131-2139}}

@techreport{shakey84,
author = {N. J. Nilsson},
title = {Shakey the Robot},
number = {Technical Note 323}, 
institution = {Artificial Intelligence Center, SRI International},
address = {Menlo Park, California}, 
year = 1984}

@article{vere83,
author={S.A. Vere}, 
journal={Pattern Analysis and Machine Intelligence, IEEE Transactions on}, 
title={Planning in Time: Windows and Durations for Activities and Goals}, 
year={1983}, 
month={May}, 
volume={PAMI-5}, 
number={3}, 
pages={246-267}}

@article{mackworth77,
title = "Consistency in networks of relations",
journal = "Artificial Intelligence",
volume = "8",
number = "1",
pages = "99 - 118",
year = "1977",
author = "A. K. Mackworth"}

@article{Freuder78,
author = {E.C. Freuder},
 title = {Synthesizing constraint expressions},
 journal = {Communications of the ACM},
 volume = {21},
 issue = {11},
 month = {November},
 year = {1978},
 pages = {958--966},
 publisher = {ACM}}
} 

@article{mack85,
author = {A. K. Mackworth  and E. Freuder},
title = {{The Complexity of some Polynomial Network Consistency Algorithms for Constraint Satisfaction Problems}}, 
journal = {Artiﬁcial Intelligence},
volume = 25,
issue = 1, 
year = 1985}

@article{currie91,
author = {K. Currie and A. Tate}, 
title = {O-Plan: The Open Planning Architecture},
journal = {Artiﬁcial Intelligence}, 
volume = 52,
pages = {49-86}, 
year = 1991}

@article{Dean:1989:UTH:76359.76360,
 author = {Dean, Thomas},
 title = {Using temporal hierarchies to efficiently maintain large temporal databases},
 journal = {J. ACM},
 volume = {36},
 issue = {4},
 month = {October},
 year = {1989},
 issn = {0004-5411},
 pages = {687--718},
 numpages = {32},
 url = {http://doi.acm.org/10.1145/76359.76360},
 doi = {http://doi.acm.org/10.1145/76359.76360},
 acmid = {76360},
 publisher = {ACM},
 address = {New York, NY, USA},
} 

@article{dean87,
author = {T. L.Dean and D.V. McDermott}, 
title = {Temporal data base management},
journal = {Artificial Intelligence}, 
volume = 32,
pages = {1-55}, 
year = 1987}

@article{Boddy93,
 author = {M. Boddy},
 title = {Temporal reasoning for planning and scheduling},
 journal = {SIGART Bulletin},
 volume = {4},
 issue = {3},
 month = {July},
 year = {1993},
 pages = {17-20},
 numpages = {4},
 publisher = {ACM},
 address = {New York, NY, USA}} 

@article{Dean88,
title = "Reasoning about partially ordered events",
journal = "Artificial Intelligence",
volume = "36",
number = "3",
pages = "375 - 399",
year = "1988",
author = "T. Dean and M. Boddy"
}

@article{mus92,
author = {N. Muscettola and S.F. Smith and A. Cesta and D. D'Aloisi},
title = {{Coordinating Space Telescope Operations in an Integrated Planning and Scheduling Architecture}}, 
journal = {IEEE Control Systems}, 
volume = 12,
issue = 1,
pages = {28-37}, 
year = 1992}

@inproceedings{ghallab94,
author = {M. Ghallab and H. Laruelle},
title = {Representation and Control in {IxTeT}, a temporal planner},
booktitle = {Proceedings of the Artificial Intelligence Planning and
                  Scheduling (AIPS)}, 
pages={61-67},
year =1994
}
                  
@incollection{ghallab87,
author = {M. Ghallab and R. Alami and R. Chatila}, 
title = {Dealing with time in planning and execution monitoring}, 
editor = {R. Bolles and B. Roth},
booktitle = {Robotics Research 4}, 
pages = {431-443}, 
publisher = {MIT Press}, 
year = 1987}
                  
@inproceedings{laborie95,
author = {P. Laborie and M. Ghallab}, 
year = 1995, 
title = {{Planning with Sharable Resource Constraints}}, 
booktitle = {Proceedings of the 14th International Joint Conf. on AI (IJCAI)}, 
pages = {1643–1649}}

@inproceedings{cesta96,
author = {A. Cesta and A. Oddi},
title = {{Gaining Efficiency and Flexibility in the Simple Temporal
                  Problem}},
booktitle = {Proceedings of the Third International Workshop on Temporal Representation and Reasoning (TIME-96)}, 
address = {Key West, FL}, 
month = {May}, 
year = 1996}
                  
@book{mus95,
author = {N. Muscettola and B. Pell and O. Hansson and S. Mohan}, 
title = {{Automating Mission Scheduling for Space-Based Observatories}}, 
series = {Astronomical Society of the Pacific Conference Series},                  
booktitle = {Robotic Telescopes.  Current Capabilities, Present Developments, and Future Prospects for Automated Astronomy},                  
editor = "{G.~W.~Henry \& J.~A.~Eaton}",
year = 1995,
volume = 79,
pages = {148}}

@inproceedings{pell97,
author = {B. Pell and E. Gat and R. Keesing and N. Muscettola and
                  B. Smith},
title = {{Robust Periodic Planning and Execution for Autonomous
                  Spacecraft}},
booktitle = {Proceedings of the International Joint Conf. on AI}, 
year = 1997}

@inproceedings{bernard98,
author = {D. E. Bernard and G. A. Dorais and C. Fry and E.B. Gamble
                  Jr. and B. Kanfesky and J. Kurien and  B. Millar and
                  N. Muscettola and P.P. Nayak and B. Pell and
                  K. Rajan and N. Rouquette and B. Smith and B.C. Williams}, 
title = {{Design of the Remote Agent experiment for spacecraft autonomy}}, 
booktitle = {Proceedings of the IEEE Aerospace Conf.}, 
address = {Snowmass, CO}, 
year = 1998}

@inproceedings{pell98,                  
author = {B. Pell and E.B. Gamble Jr. and E. Gat and R. Keesing and
                  J. Kurien and B. Millar and P.P. Nayak and C. Plaunt
                  and B.C. Williams}, 
title = {{A Hybrid Procedural/Deductive Executive for Autonomous Spacecraft}},
booktitle = {Proceedings of Autonomous Agents}, 
year = 1998}

@inproceedings{mus98a,
author = {N. Muscettola and P. Morris and I. Tsamardinos}, 
title = {Reformulating Temporal Plans for Efficient Execution}, 
booktitle = {Proceedings of 6th Internationl Conf. on Principles of
                  Knowledge Representation and Reasoning (KR)},
year = 1998}

@inproceedings{morris00,
author = {P. Morris and N. Muscettola}, 
title = {{Execution of Temporal Plans with Uncertainty}}, 
booktitle = {Proceedings of the  American Assoc. of AI},
year = 2000}

@inproceedings{wetter05,
author = {D. Wettergreen and N. Cabrol and V. Baskaran and F. Calderon
                  and S. Heys and D. Jonak and R.A. Luders and D. Pane
                  and T. Smith and J. Teza and P. Tompkins and
                  D. Villa and C. Williams and M.D. Wagner},
year =  2005, 
month = {September}, 
title = {{Second Experiments in the Robotic Investigation of Life in the Atacama Desert of Chile}}, 
booktitle = {Proceedings of the 8th International Symposium on Artiﬁcial Intelligence, Robotics and Automation in Space (iSAIRAS)}, 
address = {München, Germany}}

@article{simmons94,
author = {R. Simmons}, 
title = {{Structured Control for Autonomous Robots}}, 
journal = {IEEE Transactions on Robotics and Automation}, 
volume = 10,
issue = 1, 
month = {February}, 
year = 1994}

@inproceedings{teichteil07,
author = {F. Teichteil-Konigsbuch and P. Fabiani}, 
title = {{A Multi-thread Decisional Architecture for Real-Time Planning under
                  Uncertainty}}, 
booktitle = {Proceedings of the 3rd Intnl. Workshop on Planning and
                  Execution for Real-World domains, ICAPS},
address = {Rhode Island},
year = 2007}

@article{mdp93,
     title = {A Survey of Applications of Markov Decision Processes},
     author = {White, D. J.},
     journal = {The Journal of the Operational Research Society},
     volume = {44},
     number = {11},
     pages = {pp. 1073-1096},
     language = {English},
     year = {1993}
    }

@article{musliner95,                  
author = {D. J. Musliner and E.H. Durfee and K.G. Shin}, 
title = {{World Modeling for the Dynamic Construction of Real-Time Control Plans}}, 
journal = {Artificial Intelligence}, 
volume = "74",
number = "1",
pages = "83-127",
year = "1995"}
 
@inproceedings{barreiro09,
author={J. Barreiro and G. Jones and S. Schaffer}, 
booktitle = {Proceedings of the IEEE Aerospace Conf.}, 
title={Peer-to-peer planning for space mission control}, 
year={2009}, 
month={march}, 
pages={1-9}}


@inproceedings{Py:2010ti,
author = {Py, Frederic and Rajan, Kanna and McGann, Conor},
title = {{A systematic agent framework for situated autonomous systems}},
booktitle = {International Conference on Autonomous Agents and Multiagent Systems},
year = {2010},
address = {Toronto, CA},
month = may
}

@article{clague10,
title = {{Spotlight 6: Davidson Seamount}},
author = {D. Clague and L. Lundsten and J. Hein and J. Paduan and
                  A. Davis},
journal = {Oceanography},
year =	2010,
volume	= 23,
issue = 1}

                  
@inproceedings{bellingham10,
author = {J.G. Bellingham and B. Hobson and M. A. Godin and B. Kieft
                  and J. Erikson and R. McEwen and C. Kecy and
                  Y. Zhang and T. Hoover and E. Mellinger}, 
title = {{A Small, Long-Range AUV with Flexible Speed and Payload}}, 
booktitle = {Ocean Sciences Meeting, Abstract MT15A-14}, 
address = {Portland, OR}, 
month = {February}, 
year = 2010}


@article{pinkel11,
author = {R. Pinkel and Goldin, M A and Smith, J A and Sun, O M and Aja, A A and Bui, M N and Hughen, T},
title = {{The Wirewalker: A Vertically Profiling Instrument Carrier Powered by Ocean Waves}},
journal = {J. Atmos. and Ocean. Technology}, 
year = {2011},
volume = {28},
number = {3},
pages = {426--435},
month = {March}
}

@article{rainville01,
author = {Rainville, L and R. Pinkel},
title = {{Wirewalker: An autonomous wave-powered vertical profiler}},
journal = {J. Atmos. and Ocean. Technology}, 
volume = 18,
issue = 6,
pages = {1048–1051},
year = {2001}
}

@incollection{gneiting07,
author = {Gneiting, Tilmann and Genton, Marc G and Guttorp, Peter},
title = {{Geostatistical Space-Time Models, Stationarity, Separability, and Full Symmetry}},
year = {2006},
editor = {Finkenstaedt, B. and Held, L. and Isham, V.},
pages = {151--175},
booktitle = {Statistical Methods for Spatio-Temporal Systems},
publisher = {Monographs in Statistics and Applied Probability}}

@inproceedings{patron09,
title = "Interoperability of agent capabilities for autonomous knowledge acquisition and decision making in unmanned platforms",
author = {P. Patr\'on and D. M. Lane and Y. R. Petillot},
booktitle = {IEEE Oceans Europe}, 
address = {Bremen},
year = 2009}

@article{Adomavicius05,
author = {G. Adomavicius and A. Tuzhilin},
title = {{Toward the Next Generation of Recommender Systems: A Survey of the State-of-the-Art and Possible Extensions}},
journal ={{IEEE Transactions on Knowledge and Data Engineering}},
volume = {17},
issn = {1041-4347},
year = {2005},
pages = {734-749}
}

@inproceedings{ernits10,
author = {J. Ernits and R. Dearden and M. Pebody}, 
year = 2010, 
title = {{Automatic Fault Detection and Execution Monitoring for AUV Missions}},
booktitle = {IEEE Ocean Engineering Society Autonomous Underwater
                  Vehicles}}

@inproceedings{wang09,
author = {M. Wang and R. Dearden}, 
year = 2009,
title = {{Detecting and Learning Unknown Fault States in Hybrid Diagnosis}},
booktitle = {Proceedings of Diagnosis (DX)}}

@inproceedings{williams97,
author = {B. C. Williams and P. P. Nayak}, 
title = "A Reactive Planner for a Model-based Executive",
booktitle = {Proceedings of the International Joint Conference on Artificial Intelligence}, 
year = 1997, 
pages = {1178-85}}

@inproceedings{williams96a,
author = {B. C. Williams and P. P. Nayak}, 
title = {{A Model-based Approach to Reactive Self-Configuring Systems}},
booktitle = {Proceedings of the National Conference on Artificial Intelligence}, 
year = 1996, 
pages = {971-978}}

@article{dearden11,
author = {R. Dearden and J. Ernits}, 
year = 2011,
title = {{Automated Fault Diagnosis for an Autonomous Underwater Vehicle}}, 
journal = {IEEE Journal of Oceanic Engineering},                  
note = {Submitted under review}}

@article{Thomas06,
	Author = {H. Thomas and D. Caress and D. Conlin and D. Clague
                  and J. Paduan and J, D. Butterfield and W. Chadwick and P. Tucker},
	Journal = {EOS Trans. AGU},
	Number = {Fall Meet. Suppl., Abstract V23B-0615},
	Title = {Mapping {AUV} Survey of Axial Seamount},
	Volume = {87(52)},
	Year = {2006}}


@article{Brierley08032002,
author = {Brierley, Andrew S. and Fernandes, Paul G. and Brandon, Mark
                  A. and Armstrong, Frederick and Millard, Nicholas
                  W. and McPhail, Steven D. and Stevenson, Peter and
                  Pebody, Miles and Perrett, James and Squires, Mark
                  and Bone, Douglas G. and Griffiths, Gwyn}, 
title = {Antarctic Krill Under Sea Ice: Elevated Abundance in a Narrow Band Just South of Ice Edge}, 
volume = {295}, 
number = {5561}, 
pages = {1890-1892}, 
year = {2002}, 
journal = {Science} 
}
                  
@article{smith00,
title = {{Bridging the Gap Between Planning and Scheduling}}, 
author = {D. Smith and J. Frank and A.K. J\'nsson}, 
journal = {Knowledge Engineering Review}, 
volume = 15,
issue = 1, 
year = 2000}

@inproceedings{pederson06,
title = {{To Boldly Go Where No Human-Robot Team Has Gone Before}},
author = {L. Pedersen and W. Clancey and M. Sierhaus and N. Muscettola
                  andD. Smith and D. Lees and K. Rajan and
                  S. Ramakrishnan and P. Tompkins and A. Vera and T. Dayton}, 
booktitle = {AAAI Spring Symposium}, 
year = 2006}

@book{gen87,                  
author = {M. R. Genesereth and N. J. Nilsson}, 
title = {{Logical Foundations of Artificial Intelligence}}, 
publisher = {Morgan-Kaufman}, 
year = 1987}


@book{apt03,
author = {K. Apt}, 
year = 2003,
title = {{Principles of Constraint Programming}}, 
publisher = {Cambridge University Press}}

@inproceedings{bartak99,
author = {R. Bartak}, 
year = 1999, 
title = {Constraint Programming, in pursuit of the Holy Grail}, 
booktitle = {Proceedings of WDS99}, 
notes = {Invited Lecture}, 
address = {Prague},
Howpublished = {[Online] http://kti.mff.cuni.cz/~bartak/clp/downloads/WDS99.pdf}}

@book{marriott98,
author = {K. Marriott and P. Stuckey}, 
year = 1998, 
title = {{Programming with Constraints}}, 
publisher = {MIT Press}}

@article{lustig01,
title = {{Program Does Not Equal Program: Constraint Programming and Its Relationship to Mathematical Programming}},
author = {I. J. Lustig and J. Puget},
year = 2001,                  
journal = {Interfaces},
volume = 31,
issue = 6,
pages = {29-53}}

@inproceedings{puget95,
author = {J. Puget and M. Laconte}, 
year = 1995, 
title = {Beyond the Glass Box: Constraints as Objects}, 
booktitle = {Proceedings 5th International Logic Programming
                  Conference (ILPS)}}

@book{cp06,
author = {F. Rossi and P. Van Beek and T. Walsh}, 
title = {{Handbook of Constraint Programming}}, 
publisher = {Elsevier}, 
year = 2006}

@article{Bruckera99,
title = {{Resource-constrained project scheduling: Notation,
                  classification, models, and methods}},
author = {P. Bruckera and A. Drexlb and R. Mohring and K. Neumannd and E. Pesche},
journal = {European Journal of Operational Research},
volume = 112, 
Issue = 1, 
month = {January}, 
year = 1999,
pages = {3–41}}

@inproceedings{Nesnas:2003do,
author = {Nesnas, Issa A. D. and Wright, Anne and Bajrarcharya, Max and Simmons, Reid and Eslin, Tara},
title = {{CLARAty and challenges of developing interoperable robotic software}},
booktitle = {International Conference on Intelligent Robots and Systems},
year = {2003},
pages = {2428--2423},
month = oct
}


@incollection{hooker05,
author = {J. N. Hooker}, 
title = {{Unifying local and exhaustive search}}, 
editor = {L. Villasenor and A. I. Martinez}, 
booktitle = {Avances in la Ciencia de la Computaci\'on}, 
pages = {237-243},
year = 2005}

J. N. Hooker, Unifying local and exhaustive search, in L. Villaseñor
                  and A. I. Martinez, eds., Avances in la Ciencia de
                  la Computación (ENC 2005), 237-243. 
                  
@inproceedings{smith08,
author = {D. Smith and J. Frank and W. Cushing}, 
year = 2008,
title = {{The ANML Language}},
booktitle = {Proceedings of the workshop on Knowledge Engineering for
                  Planning and Scheduling (KEPS) at ICAPS}}


@book{rumbaugh,
title = {{Object Oriented Modeling and Design}}, 
author = {J. Rumbaugh},
publisher = {Prentice Hall},
year = {1991}
}


@inproceedings{do01,
author = {M. B. Do and S. Kambhampati}, 
title = {{SAPA: A domain independent heuristic metric temporal planner}},
booktitle = {Proceedings of the European Conference on Planning (ECP)}, 
pages = {109-121}, 
year = 2001}

@inproceedings{vanbeek99,
author = {P. van Beek and X. Chen}, 
title = {Cplan: A constraint programming approach to planning}, 
booktitle = {Proceedings of the Associatation for the Advancement of
                  AI}, 
address = {Orlando, FL},
year = 1999}

@inproceedings{vossen99,
author = {T. Vossen and M. Ball and A. Lotem and D. S. Nau}, 
title = {{On the use of integer programming models in AI planning}}, 
booktitle = {Proceedingsof the International Joint Conferenceon
                  Artificial Intelligence (IJCAI)},
address = {Stockholm, Sweden},                  
pages = {304-309}, 
year = 1999}

@inproceedings{wolfman99,
author = {S.A. Wolfman and D. S. Weld}, 
title = {{The LPSAT engine and its application to resource planning}}, 
booktitle = {Proceedings of the International Joint Conference on
                  Artificial Intelligence (IJCAI)}, 
address = {Stockholm, Sweden},
pages = {310-317}, 
year = 1999}

@inproceedings{joslin95,
author = {D. Joslin and M. Pollack},
title = {Passive and active decision postponement in plan generation}, 
booktitle = {Proceedings of the European Conference on Planning (ECP)},
year = 1995}

@inproceedings{joslin96,
author = {D. Joslin and M. Pollack}, 
title = {{Is "early commitment" in plan generation ever a good idea?}}, 
booktitle = {Proceedings of the Association for the Advancement of AI},
address = {Portland, OR},                  
pages = {1188-1193}, 
year = 1996}

@misc{europapso,
title = {{EUROPA Open Source}},
Howpublished = {[Online] Available: http://code.google.com/p/europa-pso/},
}
                  
@inproceedings{gilabert11,
title = {{AUV-2011-Underwater Robotics Experiment in the Mar Menor Coastal Lagoon}}, 
author = {J. Gilabert and S. Gomariz and E. Molino and J. del Rio and
                  A. Manuel and  M.Carreras and P. Ridao and J. Sousa
                  and R. Martins and D. Borrajo and A. Olaya and
                  B. Garau and I. Gonzalez and J. Busquets and
                  A. Guerrero and F. Garcia-Córdova and K. Rajan}, 
booktitle = {Proceedings of the Fourth International Workshop on Marine Technology (MarTech)},
year = 2011, 
address = {Cadiz, Spain}}

@inproceedings{6007772, 
author={Morris, P. and Bresina, J. and Barreiro, J. and Iatauro, M. and Smith, T.}, 
booktitle={Space Mission Challenges for Information Technology (SMC-IT), 2011 IEEE Fourth International Conference on}, 
title={State-Based Scheduling via Active Resource Solving}, 
year={2011}, 
month={August}, 
pages={29 -34}, 
doi={10.1109/SMC-IT.2011.20}}
                  
@inproceedings{morris11,
title = {{Stable Grounded Inference in Flexible Resource Scheduling}},
author = {P. Morris and J. Bresina and J. Barreiro},
year = 2011, 
booktitle = {Proceedings of the Workshop on Generalized Planning,
                  Assoc. for the Advancement of AI}}

@inproceedings{Albus:2002wp,
author = {Albus, James S.},
title = {{Metrics and Performance Measures for Intelligent Unmanned Ground Vehicles}},
booktitle = {Proceeding of the performance Metrics for Intelligent System Workshop},
year = {2002},
month = aug
}

@inproceedings{tsam98,
author = {I. Tsamardinos and N. Muscettola and P. Morris}, 
year = 1998, 
title = {Fast transformation of temporal plans for efficient execution}, 
booktitle = {Proceedings of Assoc. for the Advancement of AI, National Conference}
}
                  
@inproceedings{vidal97,
author = {T. Vidal and H. Fargier}, 
year = 1997, 
title = {Contingent durations in temporal CSPs: From consistency to controllabilities}, 
booktitle = {Proceedings of IEEE TIME International Workshop}}

@inproceedings{vidal96,
author = {T. Vidal and M. Ghallab}, 
year = 1996, 
title = {Dealing with uncertain durations in temporal constraint networks dedicated to planning}, 
booktitle = {Proceedings of 12th European Conference on Artificial Intelligence (ECAI)}, 
pages = {48–52}}

@book{berthoz,
author = {A. Berthoz}, 
title = {{The Brain's Sense of Movement}}, 
publisher = {Harvard University Press}, 
series = {Perspectives in Cognitive Neuroscience},
year = 2000}

@book{corman,
author = {T. H. Cormen and C. E. Leiserson and R. L. Rivest and C. Stein},
title = {{Introduction to Algorithms}},
publisher = {MIT Press},
year = 2009}

@book{michalewicz,
author = {Z. Michalewicz and D. B. Fogel}, 
year = 2000,
title = {How to solve it: modern heuristics}, 
publisher = {Springer}}

@article{rao95,
title = "Planning as refinement search: a unified framework for evaluating design tradeoffs in partial-order planning",
journal = "Artificial Intelligence",
volume = "76",
number = "1–2",
pages = "167 - 238",
year = "1995",
issn = "0004-3702",
doi = "10.1016/0004-3702(94)00076-D",
author = "Subbarao Kambhampati and Craig A. Knoblock and Qiang Yang"
}

